View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_high_11 (Length: 518)
Name: NF11737A_high_11
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 28795882 - 28795638
Alignment:
| Q |
18 |
catcataaaaatatccaaaagtatgtgagtgcatgtctcacaggtttagtcgtctatgtctaattcatacctgacccaaggggtaggccaacaaaacaac |
117 |
Q |
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| T |
28795882 |
catcgtaaaaatatccaaaagtatgtgagtgcatgtctcacaggtttagtcgtctatgtctaattcatacctgacccaaggggtaggccaacaaaacaac |
28795783 |
T |
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| Q |
118 |
atctgccttggacctcaattctgatcaacactctattcatctttgatctccaatttaaccaccactctgaccaccaccaaccgctacttcaaccatcctc |
217 |
Q |
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| T |
28795782 |
atatgccttggacctcaattctgatcaacactctattca-ccttgatctccaatttaaccaccactctgacaaccaccaaccgctacttcaaccatcctc |
28795684 |
T |
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| Q |
218 |
aatcaccactttcaccaccgttgttcaacaattgatctacctttga |
263 |
Q |
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| T |
28795683 |
aatcaccactttcaccaccgctgttcaacaatttattcacctttga |
28795638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 359 - 514
Target Start/End: Complemental strand, 28795533 - 28795378
Alignment:
| Q |
359 |
gatcatcaatctgaccaccaccagttaccccactctaacaaccactaaaaaccaccaccgactaacactttgaccactagaaaccataactctagccaca |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28795533 |
gatcatcaatctgaccaccaccagttaccccactctaacaaccactaaaaaccaccaccgactaacactttgaccactagaaaccataactctagccaca |
28795434 |
T |
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| Q |
459 |
aatggtcaccacctttctaaccacaactctgatcaccgcgcaaaaccaaaaattat |
514 |
Q |
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| T |
28795433 |
aatggtcaccacctttctaaccacaactctgatcaccgcacaaaaccaaaaattat |
28795378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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