View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_high_32 (Length: 409)
Name: NF11737A_high_32
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_high_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 395
Target Start/End: Original strand, 24326472 - 24326863
Alignment:
| Q |
13 |
acatcaaagttaaagcaaacaatgttttaccatgtaaaaac----atc-----gtaaaaaagcacgatttgacatcatattttggttgttgatttgcaga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24326472 |
acatcaaagttaaagcaaacaatgttttaccatgtaaaaactattagctgcaagtaaagaagcacgatttgacatcatattttggttgttgatttgcaga |
24326571 |
T |
|
| Q |
104 |
tggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaaggtcaactacaaaccatgg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24326572 |
tggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaaggtcaactacaaaccatgg |
24326671 |
T |
|
| Q |
204 |
cagagaccaaaggaggaacttgaggaagaacaaagaaagattgaagaggttgccaagaaactttgctgggagaagaagtctgagaaggctgaaattgcaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24326672 |
cagagaccaaaggaggaacttgaggaagaacaaagaaagattgaagaggttgctaagaaactttgctgggagaagaagtctgagaaggctgaaattgcaa |
24326771 |
T |
|
| Q |
304 |
tttggcaaaagatgacagacactgaatcatgtcgtagcagacaagacgactccagtgtagaattttgcgaatcctcagatcctgatgatgtc |
395 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24326772 |
tttggcaaaagatgacagacaccgaatcatgtcgtagcagacaagacgactccagtgtagaattttgcgaatcctcagatcccgatgatgtc |
24326863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 42399327 - 42399393
Alignment:
| Q |
100 |
cagatggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctgg |
166 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| || ||||| |||||||||||| | |||||||| |
|
|
| T |
42399327 |
cagatggtatgtatttgattgaagtggatagagtccttaggccaggtggttattggattctttctgg |
42399393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 99 - 301
Target Start/End: Complemental strand, 17754818 - 17754616
Alignment:
| Q |
99 |
gcagatggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaaggtcaactacaaac |
198 |
Q |
| |
|
|||||||| || ||| ||||||||||||| |||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||||| || |||||| |
|
|
| T |
17754818 |
gcagatgggatttatttgatggaagttgaccgagttctaagacctggcggttattgggtgctttcgggacctccaatccattggaaggctaattacaaag |
17754719 |
T |
|
| Q |
199 |
catggcagagaccaaaggaggaacttgaggaagaacaaagaaagattgaagaggttgccaagaaactttgctgggagaagaagtctgagaaggctgaaat |
298 |
Q |
| |
|
| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||| |||||| |
|
|
| T |
17754718 |
cctggcaaagacctaaggaggatcttgaggaagaacaaagaaagattgaagatgttgctaagctcctttgctgggagaagaagtccgagaagaatgaaat |
17754619 |
T |
|
| Q |
299 |
tgc |
301 |
Q |
| |
|
||| |
|
|
| T |
17754618 |
tgc |
17754616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 14186919 - 14187000
Alignment:
| Q |
104 |
tggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaag |
185 |
Q |
| |
|
|||| |||| |||| ||||||||| ||||||| || ||||||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
14186919 |
tggattgtacatgaaggaagttgaccgagttcttagacctggtggttattggatactttctggtcctccaatcaactggaag |
14187000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 40829053 - 40828967
Alignment:
| Q |
98 |
tgcagatggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaa |
184 |
Q |
| |
|
|||||| || |||||| | |||||||||||| ||||| ||||||||||||| | |||| | | ||||| |||||||| |||||||| |
|
|
| T |
40829053 |
tgcagagggcatgtatctaatggaagttgatcgagttttaaggcctggtggattttggattttatctggccctccaattaattggaa |
40828967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University