View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_high_4 (Length: 615)
Name: NF11737A_high_4
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_high_4 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 6 - 607
Target Start/End: Complemental strand, 178489 - 177888
Alignment:
| Q |
6 |
tgcaatgagatggacatctccctttcaaatcggataatttccaccctatcgcttctttgttgaacttgaggatttccaccaactttgcttcttcagtgac |
105 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
178489 |
tgcaataagatggacatatccctttcaaatcggataatttccaccctatcgcttctttgttgaacttgaggatttccaccaactttgcttcttcagtgac |
178390 |
T |
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| Q |
106 |
ggacaaggagctactaatgatcaccggtttggtaccaccgtcttcaaggaacacatatttcaaatgtgatggtaaaactttcaattcaaccttggtgtca |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
178389 |
ggacaaggagctactaatgatcaccggtttggtaccaccatcttcaaggaacacatatttcacatgtgatggtaaaactttcaattcaaccttggtgtca |
178290 |
T |
|
| Q |
206 |
tcaaatttggcttcttccttggcgtcctctttcaactcttctagtttggcttgatgcgggggaatctctttcaaggtgtctagctccttcaaacattctt |
305 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
178289 |
tcaactttggcttcttccttggagtcctctttcaactcttctagtttggcttgatgcgggggaatctctttcaaggtgtctagctccttcaaacattctt |
178190 |
T |
|
| Q |
306 |
caatttctcttgcctcttcggcacttatggtgtttagtgcgactgtcaaagcactttcaagaggcgttcgtttatgaaattgcttccgggtggtcatgat |
405 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
178189 |
caatttctcttgcctcttcggcacttatggtgttgagtgcgactgtcaaagcactttcaagaggcgttcgtttatgaaattgcttccgggtggtcatgat |
178090 |
T |
|
| Q |
406 |
gacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaatgttgaaagtaacctcttcattatcaactttg |
505 |
Q |
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| T |
178089 |
gacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaatgttgaaagtaacctcttctttatcaactttg |
177990 |
T |
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| Q |
506 |
accttcatgatgttatcatcgaggtcaatcatcattcgggctgtttgcatgaagttcctacccataagtagaggcacatcttcatcctcctcgatgtcca |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177989 |
accttcatgatgttatcatcgaggtcaatcatcattcgggcaatttgcatgaagttcctacccataagtagaggcacatcttcatcctcctcgatgtcca |
177890 |
T |
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| Q |
606 |
tc |
607 |
Q |
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|| |
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| T |
177889 |
tc |
177888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 34 - 607
Target Start/End: Complemental strand, 20172083 - 20171509
Alignment:
| Q |
34 |
atcggataatttccaccctatcgcttctttgttgaacttgaggatttccaccaactttgcttcttcagtgacggacaaggagctactaatgatcaccggt |
133 |
Q |
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|||||| || ||||| ||||| |||||||| || |||||||| ||| ||||| ||| ||| || ||||||||||||||||||||||| | |||||| |
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| T |
20172083 |
atcggacaacttccaacctattgcttctttattactcttgaggacttcgaccaattttttttcctctttgacggacaaggagctactaatgttaaccggt |
20171984 |
T |
|
| Q |
134 |
ttggtaccaccgtcttcaaggaacacatatttcaaatgtgatggtaaaactttcaattcaaccttggtgtcatcaaatttggcttcttccttggcgtcct |
233 |
Q |
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| T |
20171983 |
ttggtaccatcattttcaaaaaaaacgtacttcaagtgtgatggtaagacttttagttcaaccttggcatcaccaactttggattcttccttggactcat |
20171884 |
T |
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| Q |
234 |
ctttcaactcttctagtttggcttgatgcgggggaatctctttcaaggtgtctagctccttcaaacattcttcaatttctcttgcctcttcggcacttat |
333 |
Q |
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| T |
20171883 |
ctttcaactcctcaagtttagcttgatgaggaggaatttccttcaaggaatctagctccttcaagaactcttcaatatctttttcttcttcggaacctat |
20171784 |
T |
|
| Q |
334 |
ggtgtttagtgcgactgtcaaagcactttcaagaggcgttcgtttatgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaa |
433 |
Q |
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| T |
20171783 |
gacattgagtgcatccatcaaagcactttcaaggggcgtttggttatgaaattgcttccgagtggtcatgatgacttcttcggttgcatccattttaaag |
20171684 |
T |
|
| Q |
434 |
catccgaacttgtcttttgagtgctttatggcttcacgaatgttgaaagtaacctcttcattatcaact-ttgaccttcatgatgttatcatcgaggtca |
532 |
Q |
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||| | ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| || || ||||| || ||||||||||||||| |
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| T |
20171683 |
catacactcttatcttttgagtgcttaatggcttcacgaatgttgaaagttacctcttcattaacaactcttaactttcataatattatcatcgaggtca |
20171584 |
T |
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| Q |
533 |
atcatcattcgggctgtttgcatgaagttcctacccataagtagaggcacatcttcatcctcctcgatgtccatc |
607 |
Q |
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| T |
20171583 |
atcatcatccgtgccgtttgcatgaagtatcttcccaaaagtataggtacatcatcatcctcctcgatatccatc |
20171509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 17788132 - 17788212
Alignment:
| Q |
233 |
tctttcaactcttctagtttggcttgatgcgggggaatctctttcaaggtgtctagctccttcaaacattcttcaatttct |
313 |
Q |
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|||||||| || |||||||| |||| | ||| |||||||||||||| || || || |||||||| ||||||||||||||| |
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| T |
17788132 |
tctttcaattcctctagttttgctttgttcggaggaatctctttcaaagtttcaagttccttcaagcattcttcaatttct |
17788212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 17787590 - 17787509
Alignment:
| Q |
117 |
tactaatgatcaccggtttggtaccaccgtcttcaaggaacacatatttcaaatgtgatggtaaaactttcaattcaacctt |
198 |
Q |
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| T |
17787590 |
tactaatgatcaccggttttgtgccatcctcttcaaggcatacatattttagatgtgacgacaaaaccttcatttcaacctt |
17787509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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