View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_high_6 (Length: 586)
Name: NF11737A_high_6
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 563
Target Start/End: Original strand, 30841247 - 30841800
Alignment:
| Q |
11 |
tgagatggacatcacatctttacccaaaaccttnnnnnnntaggtttatgagtaatcttatttataagtgctctaccttcacttttctaagtaatgt-at |
109 |
Q |
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| T |
30841247 |
tgagttggacaccgcatctttacccaaaaccttaaaaaaataggtttatgagtcatcttatttataagtgttcaaccttcacttttctaagtaatgttat |
30841346 |
T |
|
| Q |
110 |
acttctaagtctaactcatacttgcaacttccaactcacgcttgttacacaacaatcttctctccaggtgtgagctcatcaattcatcataccccccgtc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30841347 |
acttctaagtctaactcatacttgcaacttccaactcacggttgttacactacaatcttctctccaggtgtaagctcatcaattcatcataccccccgtc |
30841446 |
T |
|
| Q |
210 |
aaacataaactttttcatccacttacacttacttgcaccgcagttgatgacactcaacgtgacaacctgcctgaacacccttggttcaaaagaatttcaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
30841447 |
aaacataaactttttcatccacttacacttacttgcaccgcagttgatgacacttaacgtgacatcccgcctgaacacccttggttcaaaagaatttcaa |
30841546 |
T |
|
| Q |
310 |
tacaaagagttggtcgaactctccattgaaccacgtcacagagaccattgttgggttacgagaggagcccgatggatcatcctcattagactaagagcga |
409 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||| ||||||| |
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| T |
30841547 |
tacaaagagttggtcgaactcttcattaaaccacgtcacagagaccactgttgcgttacgagaggagcccgatggatcatccacattggactcagagcga |
30841646 |
T |
|
| Q |
410 |
tcatacaagtgaattgtacaccccatctttactcaaaatcgtaaccttcacttttaaaacaatgtaaaacttctacctcatatttgctaaacaacattaa |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30841647 |
tcatacaagtgaattgtacaccccatctttactcaaaatcgtaacctccactttttaaacaatgtaaaacttctacctcatatttgctaaacaacattaa |
30841746 |
T |
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| Q |
510 |
ttatnnnnnnntgtggttggtccatttctttatttcctcgtactaggggttatt |
563 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30841747 |
ttataaaaaaatgtggttggtccatttctttatttcctcgtactagcggttatt |
30841800 |
T |
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