View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_high_61 (Length: 317)
Name: NF11737A_high_61
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_high_61 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 2201347 - 2201038
Alignment:
| Q |
8 |
agatggacatcaaagttcttaataaagtgtgaattgagagcctgcatatannnnnnnatcaaatataaggaactttgttaataaaacaggtaagtttttc |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2201347 |
agatagacatcaaagttcttaataaagtgtgaattgagagcctgcatttttttttttatcaaatataaggaactttgttaataaaacaggtaagtttttc |
2201248 |
T |
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| Q |
108 |
gcataaattggtgaacttgggtgaaagttaacaaaaaatgccatattgacaaaaatgttgcaacttttctaacaacatcaaagtgtaaaatctcatgtac |
207 |
Q |
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| T |
2201247 |
gcataaattagtgaacttgggtgaaagttagcaaaaaatgccatattgacaaaaatgttgcaacttttctaacaacatcaaagtgtaaaatctcatgtac |
2201148 |
T |
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| Q |
208 |
agtaggtttggaaaccaaaactcaattgcagttaagttaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcgtataaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2201147 |
agtaggtttggaaaccaaaactcaattgcagttaagttaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcgtataaa |
2201048 |
T |
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| Q |
308 |
ggaacacaat |
317 |
Q |
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|||||||||| |
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| T |
2201047 |
ggaacacaat |
2201038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 2214025 - 2213714
Alignment:
| Q |
8 |
agatggacatcaaagttcttaataaagtgtgaattgagagcctgcatatannnnnnnatcaaa-tataaggaactttgttaataaaacaggtaagttttt |
106 |
Q |
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|||| |||||||||||||||||||| ||||||||| ||| | ||||||| |||||| |||||||||||||||||||| |||||||||||||| |
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| T |
2214025 |
agatagacatcaaagttcttaataatgtgtgaatttagaacttgcatat-tttttttatcaaaatataaggaactttgttaatagtacaggtaagttttt |
2213927 |
T |
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| Q |
107 |
cgcataaattggtgaacttgggtgaaagttaacaaaaaatgccatattgacaaaaatgttgcaacttttctaacaacatcaaagtgtaaaatctcatgta |
206 |
Q |
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||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2213926 |
cgcataaattggtgagcttgggtgaaagtcagcaaaaaatgccatattgacaaaaacgttgcaacttttctaataacatcaaagtgtaaaatctcatgta |
2213827 |
T |
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| Q |
207 |
cagtaggtttggaaaccaaaactcaattgc--agttaagttaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcgtat |
304 |
Q |
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| T |
2213826 |
caacaggtttggaaaccaaaattcaattgctaattgcggacaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcatat |
2213727 |
T |
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| Q |
305 |
aaaggaacacaat |
317 |
Q |
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||||||||||||| |
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| T |
2213726 |
aaaggaacacaat |
2213714 |
T |
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