View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_high_7 (Length: 571)
Name: NF11737A_high_7
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 17 - 559
Target Start/End: Original strand, 28907845 - 28908388
Alignment:
| Q |
17 |
gacatcaaatcattcatccataagaacaattacaagaaaaggatagaaatttcaattagg-atgttgtgttaccttctcacatctagtgcaacaaatgga |
115 |
Q |
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| T |
28907845 |
gacatcaaatcattcatccataagaacaattacaagaaaaggatagaaatttaaattagggatgttgtgttaccttctcacatctagtgcaacaaatgga |
28907944 |
T |
|
| Q |
116 |
ataagtcgctcggaaagaagttgtgcaatgatctgaaaataacaaaggtaaattccagcacacttatgtaaactaactaagcaaaccaaaatatagagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28907945 |
ataagtcgctcggaaagaagttgtgcaatgatctgaaaataacaaaggtaaattccagcacatttatgtaaactaactaagcaaaccaaaatatagagaa |
28908044 |
T |
|
| Q |
216 |
tttacctggccaactcgtccaaatccacaaataatgatatgatcttgcagatcatctgtctgtaaaagatgacatccaaaattcagtaactactaagttt |
315 |
Q |
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| T |
28908045 |
tttacctggccaactcgtccaaatccacaaataatgatatgatcttgcagatcatctgtctgtaaaagatgacatccaaaattcagtaactactaagttt |
28908144 |
T |
|
| Q |
316 |
gtacgtcaactccaaataaaaaattgtaaatggcaaaactacaggtgtcagtgtcagagtaggtgcttcatagattctaaggataaaaatttatgaccat |
415 |
Q |
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| T |
28908145 |
gtacgtcaactccaaataaaaaaatgtaaatggcaaaactacaggtgtcagtgtcagagtaggtgcttcatagattctaaggataaaaatttatgaccat |
28908244 |
T |
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| Q |
416 |
gtgcaactaacgaagttacagggctgcaaccaatttaagagattttacctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaa |
515 |
Q |
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| T |
28908245 |
gtgcaactaacgaagttacagggctgcaaccaatttaagagattttacctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaa |
28908344 |
T |
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| Q |
516 |
gcaatcagctggcctcctgcagctagccatggagtgatgtccat |
559 |
Q |
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| T |
28908345 |
gcaatcagctggcctcctgcagctagccatggagtgatggccat |
28908388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 11848370 - 11848293
Alignment:
| Q |
84 |
gttaccttctcacatctagtgcaacaaatggaataagtcgctcggaaagaagttgtgcaatgatctgaaaataacaaa |
161 |
Q |
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| T |
11848370 |
gttaccttcgcacatctagtgcgacaaaaggaataagtcgctcagaaagaagttgtgcaatgatctgagaataacaaa |
11848293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 11847897 - 11847812
Alignment:
| Q |
462 |
acctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatcagctggcctcctgcagctagccatgg |
547 |
Q |
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||||||||||||||||||| ||| |||| |||||||| ||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
11847897 |
acctcactttctacaggtagtaagcttcgaacatcatgttgctcaaaacgggaagcaatcagctggcctccttcgcctagccatgg |
11847812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 11848228 - 11848163
Alignment:
| Q |
219 |
acctggccaactcgtccaaatccacaaataatgatatgatcttgcagatcatctgtctgtaaaaga |
284 |
Q |
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| T |
11848228 |
acctggccaactcgcccaaatccacaaataatgatatgatcacgcagatcgtctgtctgaaaaaga |
11848163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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