View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_high_8 (Length: 551)

Name: NF11737A_high_8
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_high_8
NF11737A_high_8
[»] chr3 (23 HSPs)
chr3 (8-411)||(9348594-9348997)
chr3 (8-389)||(9370248-9370629)
chr3 (251-328)||(9341567-9341644)
chr3 (250-378)||(9493998-9494126)
chr3 (449-550)||(9370674-9370772)
chr3 (251-340)||(9613103-9613192)
chr3 (11-93)||(9341314-9341396)
chr3 (480-550)||(9349043-9349113)
chr3 (255-320)||(9403059-9403124)
chr3 (251-313)||(9353757-9353819)
chr3 (255-320)||(9421298-9421363)
chr3 (33-77)||(9407962-9408006)
chr3 (250-373)||(9616652-9616778)
chr3 (34-77)||(9426170-9426213)
chr3 (34-77)||(9441257-9441300)
chr3 (276-373)||(9625705-9625802)
chr3 (255-379)||(9344679-9344803)
chr3 (269-325)||(9449146-9449202)
chr3 (250-325)||(9654636-9654714)
chr3 (34-77)||(9417167-9417210)
chr3 (251-313)||(9377942-9378004)
chr3 (44-93)||(9353538-9353587)
chr3 (250-319)||(9433703-9433772)
[»] chr2 (1 HSPs)
chr2 (250-325)||(20693526-20693601)
[»] chr1 (6 HSPs)
chr1 (222-325)||(8813611-8813714)
chr1 (252-328)||(235947-236023)
chr1 (223-325)||(229885-229987)
chr1 (255-325)||(250616-250686)
chr1 (270-315)||(4440665-4440710)
chr1 (44-80)||(250825-250861)
[»] chr6 (6 HSPs)
chr6 (255-315)||(28133077-28133137)
chr6 (255-325)||(28177179-28177249)
chr6 (255-315)||(28177102-28177162)
chr6 (255-325)||(28219946-28220016)
chr6 (255-315)||(7047639-7047699)
chr6 (255-315)||(28219869-28219929)
[»] scaffold0038 (2 HSPs)
scaffold0038 (255-325)||(20444-20514)
scaffold0038 (255-315)||(20367-20427)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 9348594 - 9348997
Alignment:
Q  8 tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  9348594 tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgatgaattggggtttttccatgttgtggt 9348693  T
Q  108 ggcttgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtctt 207  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |     
T  9348694 ggcctgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgagagatggtagtttc 9348793  T
Q  208 cggaatcatgtacgagtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaat 307  Q
     ||||||||||||||||||||||  ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9348794 tggaatcatgtacgagtgggaataggatgggtgaagtttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaat 9348893  T
Q  308 gagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagctccattgggagtgcagaccaatctgccgtagatgatgttgatgtgccccgctgg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9348894 gagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagctccattgggagtgcagaccaatctgccgtagatgatgttgatgtgccccgctgg 9348993  T
Q  408 ttca 411  Q
    ||||    
T  9348994 ttca 9348997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 9370248 - 9370629
Alignment:
Q  8 tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt 107  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370248 tgagatgactgggttgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt 9370347  T
Q  108 ggcttgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtctt 207  Q
    |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  9370348 ggcttgacaaggacgagagtgcgtttggagaggtaacataatggtgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtttc 9370447  T
Q  208 cggaatcatgtacgagtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaat 307  Q
    ||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370448 cggaatcatatacgagtgggaatttgatgggtgaagtttgaagatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaat 9370547  T
Q  308 gagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagctccattgggagtgcagaccaatctgccgtagatgat 389  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9370548 gagatcgatttcgttgtcgatgaattgtgatatcaaactcacaagctccatcgggagtgcagaccaatctgccgtagatgat 9370629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 9341567 - 9341644
Alignment:
Q  251 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaat 328  Q
    |||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  9341567 atggtgatttgggatggaggaagaacgccaattggaacaaatggatcgaaatcgaatgagatcgatttcggtgtcaat 9341644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 9494126 - 9493998
Alignment:
Q  250 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcac 349  Q
    ||||||| ||| ||||||| ||||||||||||||| |||| | ||||||||| |||||||||||||||||  |||| ||    |||||||||| | ||||    
T  9494126 gatggtgctttcgaatggaagaagagcgccaattgcaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcac 9494027  T
Q  350 aagctccattgggagtgcagaccaatctg 378  Q
    ||| ||||| |||||||||||||||||||    
T  9494026 aagatccatcgggagtgcagaccaatctg 9493998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 449 - 550
Target Start/End: Original strand, 9370674 - 9370772
Alignment:
Q  449 aaaaggttaacgtcttccgtaaaatagcaaaaagaagaagtaaaggaaccaaaccctaagtgacnnnnnnnnctgcactgttgaagaatagggttaactt 548  Q
    |||||||| ||||||||||||||||||||||   | ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  9370674 aaaaggtttacgtcttccgtaaaatagcaaa---aggaagtaaaggaaccaaaccctaagtgacaaaaaaaactgcactgttgaagaatagggttaactt 9370770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 9613192 - 9613103
Alignment:
Q  251 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatat 340  Q
    |||||||||||| |||||||||||||||||  | |||||||||||||||||| |||| || |||| ||||||||||||| ||||||||||    
T  9613192 atggtgatttgggatggaggaagagcgccacgttgaacaaattgatcgaaaatgaataaggtcgagttcgttgtcaatgcattgtgatat 9613103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 9341314 - 9341396
Alignment:
Q  11 gatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt 93  Q
    ||||| |||||  |||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  9341314 gatgagtgggtgaaagagtttggttttgccatgtgagttttgagtaaatctaatcaaccaaggacgacgaggaattagggttt 9341396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 480 - 550
Target Start/End: Original strand, 9349043 - 9349113
Alignment:
Q  480 aagaagaagtaaaggaaccaaaccctaagtgacnnnnnnnnctgcactgttgaagaatagggttaacttct 550  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  9349043 aagaagaagtaaaggaaccaaaccctaagtgacaaaaaaaactgcactgttgaagaatagggttaacttct 9349113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 9403059 - 9403124
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcg 320  Q
    |||||| | ||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  9403059 tgatttcggatggaagaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcg 9403124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 9353757 - 9353819
Alignment:
Q  251 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatc 313  Q
    ||||| ||||||||| | ||||||||||||| | ||||||| |||||||||||||||||||||    
T  9353757 atggtcatttggaatcggggaagagcgccaagttgaacaaactgatcgaaaacgaatgagatc 9353819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 9421298 - 9421363
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcg 320  Q
    |||||| | ||||| || || |||||||||||||||| ||||||||| ||||||||||||||||||    
T  9421298 tgatttcggatggaagatgaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcg 9421363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 9407962 - 9408006
Alignment:
Q  33 gtttttccatgtgagttttgtgtaactctaatcaaccaaggacga 77  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  9407962 gttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9408006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 9616778 - 9616652
Alignment:
Q  250 gatggtgatttggaatggaggaagagcg---ccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaact 346  Q
    ||||||||||||  | ||||||||||||   |||||||||||| |  |||||||| |||||||||||||| | |||||||||   || |||||||| | |    
T  9616778 gatggtgatttgagacggaggaagagcgacgccaattggaacataccgatcgaaagcgaatgagatcgatcttgttgtcaattccttttgatatcagatt 9616679  T
Q  347 cacaagctccattgggagtgcagacca 373  Q
     | ||||||| ||||||| ||||||||    
T  9616678 tagaagctcccttgggagagcagacca 9616652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 9426170 - 9426213
Alignment:
Q  34 tttttccatgtgagttttgtgtaactctaatcaaccaaggacga 77  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  9426170 ttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9426213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 9441300 - 9441257
Alignment:
Q  34 tttttccatgtgagttttgtgtaactctaatcaaccaaggacga 77  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  9441300 ttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9441257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 373
Target Start/End: Complemental strand, 9625802 - 9625705
Alignment:
Q  276 cgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagctccattgggagtgcagacca 373  Q
    ||||||||||||||||  |||||||| || ||||||||||||||| |||||||   ||| || |||| | ||| ||||||| |||||||  |||||||    
T  9625802 cgccaattggaacaaacagatcgaaagcgtatgagatcgatttcgatgtcaattctttgcgaaatcatattcaaaagctcctttgggagatcagacca 9625705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 379
Target Start/End: Original strand, 9344679 - 9344803
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagct 354  Q
    ||||| || ||||| |||||| |||||||||||||||  |||||||| ||||||||||| | ||| ||||| | |  ||| ||||| | | | | ||| |    
T  9344679 tgattggggatggaagaagagtgccaattggaacaaacagatcgaaagcgaatgagatcaagttcattgtcgaggcgttgcgatataagattgagaagat 9344778  T
Q  355 ccattgggagtgcagaccaatctgc 379  Q
    || |||||||| |||||||||||||    
T  9344779 cctttgggagttcagaccaatctgc 9344803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 9449146 - 9449202
Alignment:
Q  269 ggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 325  Q
    ||||| || |||| ||||||||| ||||||||||||||||||||||| ||| |||||    
T  9449146 ggaagtgcaccaaatggaacaaactgatcgaaaacgaatgagatcgagttcattgtc 9449202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 325
Target Start/End: Complemental strand, 9654714 - 9654636
Alignment:
Q  250 gatggtgatttggaatggaggaagagcg---ccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 325  Q
    ||||||||||||| | ||||||||||||   ||||||||||||||  |||||||| ||||| | |||||||||| ||||    
T  9654714 gatggtgatttgggacggaggaagagcgacgccaattggaacaaaccgatcgaaagcgaatcatatcgatttcgatgtc 9654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 9417167 - 9417210
Alignment:
Q  34 tttttccatgtgagttttgtgtaactctaatcaaccaaggacga 77  Q
    |||| |||||||||||||| |||||||| |||||||||||||||    
T  9417167 ttttgccatgtgagttttgggtaactctgatcaaccaaggacga 9417210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 9377942 - 9378004
Alignment:
Q  251 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatc 313  Q
    ||||| |||||||||||  |||||| ||||| | |||||||  ||||||||||||||||||||    
T  9377942 atggtcatttggaatgggagaagagtgccaagttgaacaaaccgatcgaaaacgaatgagatc 9378004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 9353538 - 9353587
Alignment:
Q  44 tgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt 93  Q
    ||||||||| |||| ||  ||||||||||| |||||||||||||||||||    
T  9353538 tgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggttt 9353587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 9433703 - 9433772
Alignment:
Q  250 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttc 319  Q
    |||| |||||| | || |||||||| ||||||| |||||||| |||||| || ||||||||||| |||||    
T  9433703 gatgatgattttggatcgaggaagaacgccaatgggaacaaactgatcggaagcgaatgagatcaatttc 9433772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 325
Target Start/End: Complemental strand, 20693601 - 20693526
Alignment:
Q  250 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 325  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||| ||||    
T  20693601 gatggtgatttgggatggaggaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgagttcgctgtc 20693526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 8813714 - 8813611
Alignment:
Q  222 agtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgt 321  Q
    |||||||||||||| | | |||| | ||| ||||||||||| ||||| |||||  ||||||||| |||||||||||| || |||||||||||||||||||    
T  8813714 agtgggaatttgatggttaaaatgttacggtggtgatttgggatggaagaagaatgccaattggtacaaattgatcggaagcgaatgagatcgatttcgt 8813615  T
Q  322 tgtc 325  Q
    ||||    
T  8813614 tgtc 8813611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 235947 - 236023
Alignment:
Q  252 tggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaat 328  Q
    |||||||| || ||||| ||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||||    
T  235947 tggtgattcgggatggaagaagaacgccaattggtacaaattgatcggaagcgaatgagatcgatttcgttgtcaat 236023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 229885 - 229987
Alignment:
Q  223 gtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgtt 322  Q
    ||||||||||||| | | | || | ||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| || ||||||| ||||||||||||    
T  229885 gtgggaatttgatggttaacatgtcacggtggtgatttgggatggaagaagaacgccaattggaacagattgatcggaagcgaatgatatcgatttcgtt 229984  T
Q  323 gtc 325  Q
    |||    
T  229985 gtc 229987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 250686 - 250616
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 325  Q
    |||||||| ||||| | ||| |||||||||||||| |||||||| || | | |||||||||||| ||||||    
T  250686 tgatttgggatggaagcagaacgccaattggaacatattgatcggaagctattgagatcgattttgttgtc 250616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 4440665 - 4440710
Alignment:
Q  270 gaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 315  Q
    |||||||||||  |||||||| ||||||| ||||||||||||||||    
T  4440665 gaagagcgccatgtggaacaagttgatcggaaacgaatgagatcga 4440710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 250861 - 250825
Alignment:
Q  44 tgagttttgtgtaactctaatcaaccaaggacgacga 80  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  250861 tgagttttgtgtaattctaaacaaccaaggacgacga 250825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 28133077 - 28133137
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 315  Q
    |||||||||||||| |||||| |||||||| |||||| ||||| |||||||||| ||||||    
T  28133077 tgatttggaatggaagaagagtgccaattgaaacaaactgatcaaaaacgaatgtgatcga 28133137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 28177179 - 28177249
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 325  Q
    |||||||||||||| |||||| | |||||||||| ||   ||||||||||||||||||||| ||| |||||    
T  28177179 tgatttggaatggaagaagagtgtcaattggaacgaacatatcgaaaacgaatgagatcgagttcattgtc 28177249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 28177162 - 28177102
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 315  Q
    ||||||||| | || |||||| |||||||||||||||  |||||||||| |||||||||||    
T  28177162 tgatttggagttgaagaagagtgccaattggaacaaacagatcgaaaacaaatgagatcga 28177102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 28219946 - 28220016
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 325  Q
    ||||||||||| || |||||| | |||||| ||| ||  |||||||||||||||||||||| ||| |||||    
T  28219946 tgatttggaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtc 28220016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 7047639 - 7047699
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 315  Q
    |||||||| | |||||||||||||||  | ||||||| |||||| || |||||||||||||    
T  7047639 tgatttgggacggaggaagagcgccatgttgaacaaactgatcggaagcgaatgagatcga 7047699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 28219929 - 28219869
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 315  Q
    ||||||||| | || |||||| ||||||||||| |||  ||||||||| ||||||||||||    
T  28219929 tgatttggagttgaagaagagtgccaattggaataaacagatcgaaaatgaatgagatcga 28219869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 20444 - 20514
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 325  Q
    ||||||||||| || |||||| | |||||| ||| ||  |||||||||||||||||||||| ||| |||||    
T  20444 tgatttggaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtc 20514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 20427 - 20367
Alignment:
Q  255 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 315  Q
    ||||||||| | || |||||| ||||||||||| |||  ||||||||| ||||||||||||    
T  20427 tgatttggagttgaagaagagtgccaattggaataaacagatcgaaaatgaatgagatcga 20367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University