View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_103 (Length: 376)
Name: NF11737A_low_103
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_103 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 8022336 - 8022699
Alignment:
| Q |
13 |
gatggacatcatggttgacatgatctctagcatttaacaaaccaaccaaaacatgttcagcagaggcaggttttgggtttccatcaccctgtttctctga |
112 |
Q |
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| T |
8022336 |
gatggacatcatggttgacatgatctctagcatttagcaaaccaaccaaaacatgttcagcagaagcatgttttgtgcttccaacaccctgtttctctga |
8022435 |
T |
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| Q |
113 |
ttctccaaagaataccgcaagttgtttctttgatatctttattttcgccttaccattagcatcagaagaagctcttagtgcacctaaaagcttctctttc |
212 |
Q |
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|||||| || ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8022436 |
ttctcccaacaataccgcaagttctttctttgatatctttattttcaccttaccattagcatcagaagaagctcttagtgcacctaaaagcttctctttc |
8022535 |
T |
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| Q |
213 |
tctatgttccccaaactcaaaccatgaacttcatcaaaaactttgcttgaattcatcctactcttatggtttgatgtcagtgatccccaatcttctccgg |
312 |
Q |
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| T |
8022536 |
tctatgttccccaaactcaaaccatgaacttcatcaaaaactttgcttgaattcatcctactcttatggtttgatgtcagtgatccccaatcttctccgg |
8022635 |
T |
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| Q |
313 |
cccactccatcgaagacgatgtgcaacaatttcccatatatatttgtcttttggtgtgcgcgga |
376 |
Q |
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| T |
8022636 |
cccactccatcgaagatgatgtgcaacaatttcccatatatatttgtcttttggtgtgcgcgga |
8022699 |
T |
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