View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_106 (Length: 371)

Name: NF11737A_low_106
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_106
NF11737A_low_106
[»] chr4 (3 HSPs)
chr4 (18-346)||(5313554-5313886)
chr4 (145-251)||(16839429-16839535)
chr4 (163-342)||(11355130-11355311)
[»] chr1 (2 HSPs)
chr1 (145-345)||(30737676-30737880)
chr1 (162-233)||(28451574-28451645)
[»] chr6 (1 HSPs)
chr6 (37-251)||(7499954-7500168)
[»] chr2 (3 HSPs)
chr2 (145-251)||(45495640-45495746)
chr2 (145-251)||(45503382-45503488)
chr2 (37-242)||(5986896-5987101)
[»] chr5 (2 HSPs)
chr5 (37-251)||(9504983-9505197)
chr5 (18-122)||(33050399-33050503)
[»] scaffold0014 (1 HSPs)
scaffold0014 (62-251)||(62443-62632)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 5313554 - 5313886
Alignment:
Q  18 gtatctggatacacgatgctcaaatcacatgacatgtaaaaa-gacttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataa 116  Q
    |||| |||||||||||||||||||||| |||||| ||||||| | |||||||||| |||||||||| |||||||||  ||||||||||||||||||||||    
T  5313554 gtatatggatacacgatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataa 5313653  T
Q  117 tagtatagtttgtgttaaaagaactagaaaagtattgattcataaaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgaga 216  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||| ||| ||||||||||| ||||| | ||||||||||    
T  5313654 tagtatagtttgtgttaaaggaactagtaaagtattgattcatagaaaagatggcaagaaaacatatatcactgatgtattgtatgttcaaaatatgaga 5313753  T
Q  217 agtaatctcattagtataggccaattgctgcaaaatg--tctactacgaaaatggaagcacatgctataaggg-ttttttattgcaagaatagattgatc 313  Q
    |||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5313754 agtaatctcattagtacaggccaattgctgcaaaatgtatatactatgaaaatggaagcacatgctacaagggtttttttattgcaagaatagattgatc 5313853  T
Q  314 ttgaaggctccattgtcaaagaagagaactttc 346  Q
    ||||||||||||||||||||||||| |||||||    
T  5313854 ttgaaggctccattgtcaaagaagaaaactttc 5313886  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 16839535 - 16839429
Alignment:
Q  145 aaagtattgattcataaaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 244  Q
    |||||| |||||||||| || |||||||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  16839535 aaagtactgattcataagaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 16839436  T
Q  245 tgcaaaa 251  Q
    |||||||    
T  16839435 tgcaaaa 16839429  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 342
Target Start/End: Complemental strand, 11355311 - 11355130
Alignment:
Q  163 aaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaatg--tctacta 260  Q
    ||||||||||||||||| |  ||||||| ||| |||||||| ||||| ||||  |||||||||||||||||||| || ||  |||| || |  | |||||    
T  11355311 aaagatggcaagaaagcttgcattactggtgtgttatatgtgccaaacatgaagagtaatctcattagtataggtcagttattgcagaaaggctatacta 11355212  T
Q  261 cgaaaatggaagcacatgctataagggttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaagagaac 342  Q
     ||||||||| | |||  |||| | ||||||| |  ||||||  ||||||||  | |||||||||||||||||||| |||||    
T  11355211 tgaaaatggaggaacaaactatgatggtttttgacagcaagagaagattgattctaaaggctccattgtcaaagaaaagaac 11355130  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 145 - 345
Target Start/End: Original strand, 30737676 - 30737880
Alignment:
Q  145 aaagtattgattcataaaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 244  Q
    |||||||||||||||| |||| ||||||||||||||| ||| | |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |    
T  30737676 aaagtattgattcatagaaaaaatggcaagaaagcatgtatcattgatgtgttatatgtgccaaatatgagaagtaatctcattagtataggtcaattac 30737775  T
Q  245 tgcaaaatg--tctactacgaaaatggaagcacatgctataaggg--ttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaagaga 340  Q
    ||||||| |  | | |||  || ||||||||| |  |||| ||||  |||||||||| ||| |||| |||||| |||| || || ||||||||| |||||    
T  30737776 tgcaaaagggttgtgctattaagatggaagcaaaaactatgagggttttttttattggaaggataggttgatcctgaaagccccgttgtcaaagcagaga 30737875  T
Q  341 acttt 345  Q
    |||||    
T  30737876 acttt 30737880  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 28451645 - 28451574
Alignment:
Q  162 aaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtat 233  Q
    |||||||||||||||||||| ||| ||| |||| || ||||| | |||||||||||| ||||| || |||||    
T  28451645 aaaagatggcaagaaagcatatatcacttatgtgttttatgtgctaaatatgagaagcaatcttatgagtat 28451574  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 7500168 - 7499954
Alignment:
Q  37 tcaaatcacatgacatgtaaaaagacttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 136  Q
    ||||||||||||||||| || ||  |||||||||| || |||||||||||| |||    ||| | |||||||||| | ||| ||||||||||||   |      
T  7500168 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagagaatcgtatagtttgtgcagatg 7500069  T
Q  137 gaactagaaaagtattgattcataaaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 236  Q
    | | | | |||||| |||||||||  || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  7500068 gtattgggaaagtactgattcataggaaggatgacaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 7499969  T
Q  237 ccaattgctgcaaaa 251  Q
      |||| ||||||||    
T  7499968 ttaattactgcaaaa 7499954  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 45495746 - 45495640
Alignment:
Q  145 aaagtattgattcataaaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 244  Q
    |||||| |||||||||  || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45495746 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45495647  T
Q  245 tgcaaaa 251  Q
    |||||||    
T  45495646 tgcaaaa 45495640  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 45503488 - 45503382
Alignment:
Q  145 aaagtattgattcataaaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 244  Q
    |||||| |||||||||  || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45503488 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45503389  T
Q  245 tgcaaaa 251  Q
    |||||||    
T  45503388 tgcaaaa 45503382  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 242
Target Start/End: Original strand, 5986896 - 5987101
Alignment:
Q  37 tcaaatcacatgacatgtaaaaagacttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 136  Q
    |||||||||||||||   || ||  |||||||||| || |||||||||||| ||| |  ||| | |||||||||| | ||||||||||||||||     |    
T  5986896 tcaaatcacatgacagacaagaaatcttggttctctgaattagatgattcagttaacagaaaaataagatttgcagacaatagtatagtttgtgcagcta 5986995  T
Q  137 gaactagaaaagtattgattcataaaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 236  Q
      | | |||||||| |||||||||  || |||||||||||||| |  || |||||||| || ||||||||||| |||||||  | |||||||||||| ||    
T  5986996 atattggaaaagtactgattcataggaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaaacagtctcattagtattgg 5987095  T
Q  237 ccaatt 242  Q
     |||||    
T  5987096 tcaatt 5987101  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 9504983 - 9505197
Alignment:
Q  37 tcaaatcacatgacatgtaaaaagacttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 136  Q
    ||||||||||||||||| || ||  |||||||||| || |||||||||||| |||    ||| | |||||||||| | |||| |||||||||||          
T  9504983 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagacaatattatagtttgtgcagctg 9505082  T
Q  137 gaactagaaaagtattgattcataaaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 236  Q
    | | | | |||||| | |||||||  || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  9505083 gtattgggaaagtactaattcataggaaggatgtcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 9505182  T
Q  237 ccaattgctgcaaaa 251  Q
     ||||| || |||||    
T  9505183 tcaattactacaaaa 9505197  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 33050399 - 33050503
Alignment:
Q  18 gtatctggatacacgatgctcaaatcacatgacatgtaaaaagacttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataat 117  Q
    ||||||||||||| ||||||||||| |||| |||||| ||||| |||||| |||  | |||||| |||||||||    ||||| |||||| ||| |||||    
T  33050399 gtatctggatacatgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagattcgcagataat 33050498  T
Q  118 agtat 122  Q
    |||||    
T  33050499 agtat 33050503  T

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Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 62443 - 62632
Alignment:
Q  62 cttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaagaactagaaaagtattgattcataa 161  Q
    |||||||||| || |||||||||||| |||    ||| | |||||||||| | ||||||||||||||||      | | | |||| ||| |||||||||     
T  62443 cttggttctctgaattagatgattcagttaatagaaaaataagatttgcagacaatagtatagtttgtgcagttggtattggaaaggtactgattcatag 62542  T
Q  162 aaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 251  Q
     || |||||||||| ||| |  || |||||||| || ||||||||||| |||||||| ||||||| |||||| || |||||  |||||||    
T  62543 gaaggatggcaagagagcctgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcagtagtattggtcaattattgcaaaa 62632  T

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