View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_11 (Length: 560)
Name: NF11737A_low_11
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_11 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 9 - 560
Target Start/End: Original strand, 20018625 - 20019175
Alignment:
| Q |
9 |
atggacatcataatgattcaaaagggattttacaatttatcttaataaaagacggattgttcctctagtttagctaatccacnnnnnnnnnncttttcat |
108 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20018625 |
atggacatcataatgattcaaaagggattttacaagttatcttaataaaagacggattgttcctctagtttagctaatccacaaaaaaaaa-cttttcat |
20018723 |
T |
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| Q |
109 |
ttatactatgaaaacgcataaaactttataataccatattttttagttgagtatcaacatcatggtcagtgtcagattccttgacggctgtccccaaatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20018724 |
ttatactatgaaaacgcataaaactttataataccatattttttagttgagtatcaacatcaaggtcagtgtcagattccttgacggctgtccccaaatt |
20018823 |
T |
|
| Q |
209 |
ctgtgccagtccagatggattttctacaacaaaccatgatgcaagactgttagccacataaaatgcagttcatgtgtttggtactagtcattcttaacat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20018824 |
ctgtgccagtccagatggattttctacaacaaaccatgatgcaagactgttagccacataaaatgcagttcatgtgtttggtactagtcattcttaacat |
20018923 |
T |
|
| Q |
309 |
tcaaattataaatcatgataatacatgaaattttattataagatagcaaaagaaatatccatatttttaccatcctcagtaatcatgttagatttctgct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20018924 |
tcaaattataaatcatgataatacatgaaattttattataagatagcaaaagaaatatccatatttttaccatcctcagtaatcatgttagatttctgct |
20019023 |
T |
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| Q |
409 |
tcttgcttaaaggagaatcctgccacaaaaaggatttacttagacttttttgccgaaaattttatattgcaagtgcagagcacattatattcataaacca |
508 |
Q |
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| T |
20019024 |
tcttgcttaaaggagaatcctgccacaaaaaggatttaattagacttttttgccgaaaattttatattgcaactgcagagcacattatattcataaacca |
20019123 |
T |
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| Q |
509 |
aatatttatataaaaaataatcgataaacatactttgttactgtcatcttga |
560 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20019124 |
aatatttatataaaaactaatcgataaacatactttgttactgtcatcttga |
20019175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 199 - 465
Target Start/End: Original strand, 20000010 - 20000280
Alignment:
| Q |
199 |
tccccaaattctgtgccagtccagatggattttctacaacaaaccatgatgcaagactgttagccacataaaatgcagttcatg-tgtttggtactagtc |
297 |
Q |
| |
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|||| |||||||| ||||| ||||||||||||||||||| || || |||||||||||||||||||||| || ||||| |||| ||||||||||||||| |
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| T |
20000010 |
tccctaaattctgagccagcccagatggattttctacaaagaaacaagatgcaagactgttagccacatgaacggcagtccatggtgtttggtactagtc |
20000109 |
T |
|
| Q |
298 |
attcttaacattcaaattataaatcatgataatacatgaaattttattataagatag-caaaaga--aatatccatatttttaccatcctcagtaatcat |
394 |
Q |
| |
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||||| |||||||||||||| |||| |||| ||||||| |||||||||| ||||| ||||||| || ||||||| | ||||||||||||| ||| || |
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| T |
20000110 |
attctgaacattcaaattattgatcaaaataaaacatgaatttttattatatgatagtcaaaagagaaaaatccataatcttaccatcctcagaaattat |
20000209 |
T |
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| Q |
395 |
gttagatttctgcttcttgcttaaaggagaatcctgccacaaaaaggatttacttagacttttttgccgaa |
465 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||| ||||||| || |||||||||||||||||| |
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| T |
20000210 |
gttagatttctgcttcttacttaaaggagaatcctgtcacagaaaggatgtaattagacttttttgccgaa |
20000280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 101 - 464
Target Start/End: Original strand, 20028704 - 20029069
Alignment:
| Q |
101 |
cttttcatttatactatgaaaacgcataaaactttataataccatattttttagttgagtatcaacatcatggtcagtgtcagattccttgacggctgtc |
200 |
Q |
| |
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|||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |
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| T |
20028704 |
cttttcatttatgctaccaaaatgcataaaacattataataccatattttttagttgagcatcaacatcaatgtcagtgtcagattccttgacgactgtc |
20028803 |
T |
|
| Q |
201 |
cccaaattctgtgccagtccagatggattttctacaacaaaccatgatgcaagactgttagccacataaaatgcagttcatgtgtttggtactagtca-- |
298 |
Q |
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|||||||||| ||||| ||||||||||||||||||| || || | |||||| |||||| || || || | |||||||||||||| ||| |||||| |
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| T |
20028804 |
accaaattctgagccagcccagatggattttctacaaagaaacaaggagcaagattgttagtcatatgaacttcagttcatgtgttttgtattagtcacc |
20028903 |
T |
|
| Q |
299 |
ttcttaacattcaaattataaatcatgataatacatgaaattttattataagat-agcaaaagaaatatccatatttttaccatcctcagtaatcatgtt |
397 |
Q |
| |
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|||| ||| ||||||||||| || | | || |||||| | |||||||||||| | ||||||||| ||||||| | |||||||| || |||| ||||| |
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| T |
20028904 |
ttctgaaccttcaaattatagat-aaaaaaaagcatgaattcttattataagataatcaaaagaaaaatccataatcttaccatcaccaataataatgtt |
20029002 |
T |
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| Q |
398 |
agatttctgcttcttgcttaaaggagaatcctgccacaaaaaggatttacttagacttttttgccga |
464 |
Q |
| |
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|||| |||||||| | ||| ||||||| |||||||| | ||||||| || ||| || ||||| |||| |
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| T |
20029003 |
agatctctgcttcatacttgaaggagagtcctgccaaagaaaggatgtaattaaacattttttccga |
20029069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 101 - 287
Target Start/End: Original strand, 20009267 - 20009453
Alignment:
| Q |
101 |
cttttcatttatactatgaaaacgcataaaactttataataccatattttttagttgagtatcaacatcatggtcagtgtcagattccttgacggctgtc |
200 |
Q |
| |
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|||||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||| |
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| T |
20009267 |
cttttcatttatgctacgaaagcacataaaactttataataccatattttttagttgagcatcaacatcaatgtcattgtcagattccttgacgactgtc |
20009366 |
T |
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| Q |
201 |
cccaaattctgtgccagtccagatggattttctacaacaaaccatgatgcaagactgttagccacataaaatgcagttcatgtgttt |
287 |
Q |
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|| |||||||| |||| ||||||||||||||||||| || || | ||||||||||||||||| || || |||||||||||||||| |
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| T |
20009367 |
cctaaattctgagccatcccagatggattttctacaaagaaacaaggtgcaagactgttagccagatgaactgcagttcatgtgttt |
20009453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 560
Target Start/End: Original strand, 20000285 - 20000352
Alignment:
| Q |
493 |
ttatattcataaaccaaatatttatataaaaaataatcgataaacatactttgttactgtcatcttga |
560 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20000285 |
ttatattcatcaaccacatatttatgtaaaaaataatcgataaacatactttgttactgtcatcttga |
20000352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 512 - 560
Target Start/End: Original strand, 20029185 - 20029233
Alignment:
| Q |
512 |
atttatataaaaaataatcgataaacatactttgttactgtcatcttga |
560 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
20029185 |
atttatataaaaattaatcgataaacatactttgttactatcatcttga |
20029233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 475
Target Start/End: Original strand, 20009500 - 20009618
Alignment:
| Q |
356 |
aaaagaaatatccatatttttaccatcctcagtaatcatgttagatttctgcttcttgcttaaaggagaatcctgccacaaaaaggatttacttagactt |
455 |
Q |
| |
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|||||||| ||| ||| | |||||||| || |||||||||||||| | | |||| | |||||||||||||||||| | | ||||||| || |||||| | |
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| T |
20009500 |
aaaagaaaaatcgataatcttaccatcaccaataatcatgttagatcttttcttcatacttaaaggagaatcctgctaaagaaaggatgtaattagacat |
20009599 |
T |
|
| Q |
456 |
ttttgccgaaaattttatat |
475 |
Q |
| |
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||||| || ||||||||||| |
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| T |
20009600 |
ttttgtcg-aaattttatat |
20009618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 20009698 - 20009773
Alignment:
| Q |
483 |
gcagagcacattatattcataaaccaaatatttatataaaaaataatcgataaacatactttgttactgtcatcttga |
560 |
Q |
| |
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||||| ||||||| |||||| ||||| || |||||| |||| | |||||||||||||||| |||||| ||||||||| |
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| T |
20009698 |
gcagaacacattacattcatcaaccacat--ttatatgaaaatttatcgataaacatacttcgttactatcatcttga |
20009773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 118 - 459
Target Start/End: Complemental strand, 12573715 - 12573376
Alignment:
| Q |
118 |
gaaaacgcataaaactttataataccatattttttagttgagtatcaacat---catggtcagtgtcagattccttgacggctgtccccaaattctgtgc |
214 |
Q |
| |
|
|||||||||||||| || | |||||||||||||| ||||||| ||| |||| || ||| | ||||||||||||| | |||||||||||||||| || |
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| T |
12573715 |
gaaaacgcataaaagtt-acaataccatatttttaagttgagcatcgacattaacaatgtcggcatcagattccttgatgactgtccccaaattctgagc |
12573617 |
T |
|
| Q |
215 |
cagtccagatggattttctacaacaaaccatgatgcaagactgttagccacataaaatgcagttcatgtgtttggtactagtca--ttcttaacattcaa |
312 |
Q |
| |
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||| ||||||| ||||||||||| || || ||||||| |||||||| ||||| | || ||||||||| ||||| || | ||| |||| ||||||||| |
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| T |
12573616 |
cagaccagatgaattttctacaaggaaacaagatgcaaaactgttagtcacatgagctgtagttcatgtctttggaaccattcaccttctgaacattcaa |
12573517 |
T |
|
| Q |
313 |
attataaatcatgataatacatgaaattttattataagat-agcaaaagaaatatccatatttttaccatcctcagtaatcatgttagatttctgcttct |
411 |
Q |
| |
|
|||||| ||||| |||| | ||||| |||||| ||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||| ||||||| |
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| T |
12573516 |
attatagatcataataaaaaatgaatttttatcataagataatcaaaagaaaaatc-------ttaccatccgcagtaatcatgttagatttatgcttct |
12573424 |
T |
|
| Q |
412 |
tgcttaaaggagaatcctgccacaaaaaggatttacttagactttttt |
459 |
Q |
| |
|
| |||||||||||| |||||||| ||||||| || |||||||||||| |
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|
| T |
12573423 |
tagttaaaggagaattctgccacagaaaggatgtaattagactttttt |
12573376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 560
Target Start/End: Complemental strand, 12573280 - 12573202
Alignment:
| Q |
483 |
gcagagcacattatattcataaaccaaatatttatataaaaaat-aatcgataaacatactttgttactgtcatcttga |
560 |
Q |
| |
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||||| ||| ||| |||||| | ||| || |||||||||||||| || |||| |||||||||||||||||||||||||| |
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| T |
12573280 |
gcagaacacgttacattcatcacccacatttttatataaaaaattaaacgatcaacatactttgttactgtcatcttga |
12573202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 12573844 - 12573780
Alignment:
| Q |
15 |
atcataatgattcaaaagggattttacaatttatcttaataaaagacggattgttcctctagttt |
79 |
Q |
| |
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|||||||||||||||||| |||||||| | |||||||| ||||| || |||| ||| |||||||| |
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|
| T |
12573844 |
atcataatgattcaaaagagattttactagttatcttagtaaaaaactgattattcttctagttt |
12573780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 19000286 - 19000216
Alignment:
| Q |
395 |
gttagatttctgcttcttgcttaaaggagaatcctgccacaaaaaggatttacttagacttttttgccgaa |
465 |
Q |
| |
|
||||||||| | ||||| ||| ||||| |||||||||||||||| ||| || |||||||||||||||||| |
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|
| T |
19000286 |
gttagattttagattctttcttgaaggaaaatcctgccacaaaaatgatataattagacttttttgccgaa |
19000216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 48300256 - 48300332
Alignment:
| Q |
14 |
catcataatgattcaaaagggattttacaatttatcttaataaaagacggattgttcctctagtttagctaatccac |
90 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| | ||| | ||||||| | || |||||||||||||| |
|
|
| T |
48300256 |
catcataatgattcaaaagagattttacaagttatcttagtgaaaaattaattgttcttatattttagctaatccac |
48300332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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