View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_115 (Length: 366)
Name: NF11737A_low_115
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_115 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 44670907 - 44670674
Alignment:
| Q |
17 |
ggacatcataattcgttgacgtattcttacacgttgacaaaccaatcctatttttggctttatataattgaatttgaatcaagtttgccaattcattctt |
116 |
Q |
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| T |
44670907 |
ggacatcataattcgttgacgtattcttacacgttgacaaaccaatcctatttttggctttatattattgaatttgaatcaagtttgccaattcattctt |
44670808 |
T |
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| Q |
117 |
agtagtatgtcgtagcaaaatctttttaatcaccgaattagatatgtggaataggatgttttatgccatcaaatttcagtttgttatannnnnnncctca |
216 |
Q |
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| T |
44670807 |
agtagtatgtcgtagcaaaatctttttaatcaccgaattagatatgtggaataggatgttttatgccatcaaatttcagtttgttatatttttttcctca |
44670708 |
T |
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| Q |
217 |
aaataatgactttttaaaaaataaaataactacc |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44670707 |
aaataatgactttttaaaaaataaaataactacc |
44670674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 259 - 366
Target Start/End: Complemental strand, 44670252 - 44670145
Alignment:
| Q |
259 |
atacggaaggtgccaactttattaactcaaaagctggaaataacaccaacatcgtccaaatttacaagagattacaaataaggggagcataatagagagt |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44670252 |
atacggaaggtgccaactttattaactcaaaagctggaaataacaccaacatcgtccaaattttcaagagattacaaataaggggagcataatagagagt |
44670153 |
T |
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| Q |
359 |
ctgtttaa |
366 |
Q |
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|||||||| |
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| T |
44670152 |
ctgtttaa |
44670145 |
T |
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