View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_117 (Length: 364)
Name: NF11737A_low_117
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_117 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 46899430 - 46899082
Alignment:
| Q |
16 |
acatcatacatcagagaaaataaccttctacataatcatcatacaagaacacaaaaacagtagaattatatgataaagttaaaatcaaaaccattaatca |
115 |
Q |
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| T |
46899430 |
acatcatacatcagagaaaataaccttctacataatcatcatagaagaacacaaaaacagtagaattatatgataaagttaaaatcaaaaccattaatca |
46899331 |
T |
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| Q |
116 |
aaatagggagaatggaaattaacaaacagatgagttaacattacctgcttctccatgagcaaagtcacaggtctccccaaagggacagctccctgtatgc |
215 |
Q |
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| T |
46899330 |
aaatagggagaatggaaattaacaaacagatgagttaacattacctgcttctccatgagcaaagtcacaggtctccccaaagggacagctccctgtatgc |
46899231 |
T |
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| Q |
216 |
tgccattgacacagcttagtcttccaataagcgctccttgctggcttgttcacagccctaatgccttccaaattgttagaaccttacccacacgactttg |
315 |
Q |
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| T |
46899230 |
tgccattgacacagcttagtcttccaataagcactccttgctggcttgttcacagccctaatgccttccaaattgttagaaccatacccaaaagactttg |
46899131 |
T |
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| Q |
316 |
gagaacccatatttccaacgcttatttcagaatactctcttgttttcca |
364 |
Q |
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| T |
46899130 |
gagaaccaatatttccaacgcttattgcagaacactctcttgttttcca |
46899082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 95 - 280
Target Start/End: Complemental strand, 46864220 - 46864032
Alignment:
| Q |
95 |
taaaatcaaaaccattaatcaaaatagggagaatggaaattaacaaacagatgagttaacattacctgcttctccatgagcaaagtcacaggtctcccca |
194 |
Q |
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| T |
46864220 |
taaaaccaagaccaataatcaaaaaagggaaaagggaaatcaacacaaagatgagttattattacctgcttctccatgagaaaagtgacagtcctcccca |
46864121 |
T |
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| Q |
195 |
aagggacagctccctgtatgctgccattg---acacagcttagtcttccaataagcgctccttgctggcttgttcacagccctaatgcc |
280 |
Q |
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| T |
46864120 |
aagggacagctcccttgatgctgccaacggaaacacatattattcttccaataagtgcccctagctggcttgttcacagccctaatgcc |
46864032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 46890619 - 46890548
Alignment:
| Q |
223 |
gacacagcttagtcttccaataagcgctccttgctggcttgttcacagccctaatgccttccaaattgttag |
294 |
Q |
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| T |
46890619 |
gacacagcttagtcttccgataagtgctccttgcttgcttgttcaaagccctgctgccttccaaattattag |
46890548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 19846049 - 19845974
Alignment:
| Q |
223 |
gacacagcttagtcttccaataagcgctccttgctggcttgttcacagccctaatgccttccaaattgttagaacc |
298 |
Q |
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| T |
19846049 |
gacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattagaacc |
19845974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 22691745 - 22691811
Alignment:
| Q |
230 |
cttagtcttccaataagcgctccttgctggcttgttcacagccctaatgccttccaaattgttagaa |
296 |
Q |
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| T |
22691745 |
cttaatcttccagtaagtgccccttgctggcttgttcacagacctattgccttccaaactattagaa |
22691811 |
T |
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