View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_121 (Length: 363)
Name: NF11737A_low_121
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_121 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 363
Target Start/End: Original strand, 24652616 - 24652967
Alignment:
| Q |
12 |
atggacatcatgaacatgttcatggacatggacaaagatgaatattgttccagtggctgggaaaatattgtaggagaggattgcaagaaaaacaacagtg |
111 |
Q |
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| T |
24652616 |
atggacatcatgaacatgttcatggacatggacaaagatgaatattgttccagtggctgggaaaatattgtaggagacgattgcaagaaaaacaacagtg |
24652715 |
T |
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| Q |
112 |
gctctatttctctacctccatttgggctagccacttacaaaatgcagagtgatctttggctaaacactgatccaaatgattatgaaaagatatcatatct |
211 |
Q |
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| T |
24652716 |
gctctatttctctacctccatttgggctagccacttacaaaatgcagagtgatctttggctaaacactgatccaaatgattatgaaaagatatcatatct |
24652815 |
T |
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| Q |
212 |
atgtagtgctgcagactcatggttgaaacaactcaatgtccaccaccatgacttcgactttttcacatcgagctctgttgtgtgaattggtttgtctatc |
311 |
Q |
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| T |
24652816 |
atgtagtgctgcagactcatggttgaaacaactcaatgtccaccaccatgacttcgactttttcacatcgagctctgttgtgtgaattggtttgtctatc |
24652915 |
T |
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| Q |
312 |
cttacctaactgtccattgatttagctttgagactctgatgagaatggactg |
363 |
Q |
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| T |
24652916 |
cttacctaactgtccattgatttagctttgagactctgatgagaatggactg |
24652967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 34565198 - 34565256
Alignment:
| Q |
219 |
gctgcagactcatggttgaaacaactcaatgtccaccaccatgacttcgactttttcac |
277 |
Q |
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| T |
34565198 |
gctgcagactcgtggttgaagcaactcaacgctcaccaccatgacttcaactttttcac |
34565256 |
T |
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