View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_122 (Length: 363)

Name: NF11737A_low_122
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_122
NF11737A_low_122
[»] chr6 (1 HSPs)
chr6 (60-348)||(23118241-23118529)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 60 - 348
Target Start/End: Original strand, 23118241 - 23118529
Alignment:
Q  60 gctgcagcaagcagattttctttttctcttctccctctttgtcatcgcaaaaaggagagggagcctacatagagggtgcagttggagaggaagcatcaga 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23118241 gctgcagcaagcagattttctttttctcttctccctctttgtcatcgcaaaaaggagagggagcctacatagagggtgcagttggagaggaagcatcaga 23118340  T
Q  160 agaagatgagacatcaggcggattcatgttaaaaaccgaaggctggagaggatttgcggccagaggaggcatgttgagaaggatgttaagcgcgcttgct 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23118341 agaagatgagacatcaggcggattcatgttaaaaaccgaaggctggagaggatttgcggccagaggaggcatgttgagaaggatgttaagcgcgcttgct 23118440  T
Q  260 tgccagttcctctgaatttgtaattcaagagtattgtaggccagatggttcatgatggcaatttgattttcacacagcttacggatgtc 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23118441 tgccagttcctctgaatttgtaattcaagagtattgtaggccagatggttcatgatggcaatttgattttcacacagcttacggatgtc 23118529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University