View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_128 (Length: 359)
Name: NF11737A_low_128
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_128 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 2 - 358
Target Start/End: Complemental strand, 178284 - 177928
Alignment:
| Q |
2 |
tttggcttcttccttggcgtcctctttcaactcttctagtttggcttgatgcgggggaatctctttcaaggtgtctagctccttcaaacattcttcaatt |
101 |
Q |
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| T |
178284 |
tttggcttcttccttggagtcctctttcaactcttctagtttggcttgatgcgggggaatctctttcaaggtgtctagctccttcaaacattcttcaatt |
178185 |
T |
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| Q |
102 |
tctcttgcctcttcggcacttatggtgtttagtgcgactgtcaaagcactttcaagaggcgttcgtttatgaaattgcttccgggtggtcatgatgactt |
201 |
Q |
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| T |
178184 |
tctcttgcctcttcggcacttatggtgttgagtgcgactgtcaaagcactttcaagaggcgttcgtttatgaaattgcttccgggtggtcatgatgactt |
178085 |
T |
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| Q |
202 |
cttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaatgttgaaagtaacctcttcattatcaactttgacctt |
301 |
Q |
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| T |
178084 |
cttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaatgttgaaagtaacctcttctttatcaactttgacctt |
177985 |
T |
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| Q |
302 |
catgatgttatcatcgaggtcaatcatcattcgagccgtttgcatgaagttcctacc |
358 |
Q |
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| T |
177984 |
catgatgttatcatcgaggtcaatcatcattcgggcaatttgcatgaagttcctacc |
177928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 2 - 351
Target Start/End: Complemental strand, 20171906 - 20171556
Alignment:
| Q |
2 |
tttggcttcttccttggcgtcctctttcaactcttctagtttggcttgatgcgggggaatctctttcaaggtgtctagctccttcaaacattcttcaatt |
101 |
Q |
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| T |
20171906 |
tttggattcttccttggactcatctttcaactcctcaagtttagcttgatgaggaggaatttccttcaaggaatctagctccttcaagaactcttcaata |
20171807 |
T |
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| Q |
102 |
tctcttgcctcttcggcacttatggtgtttagtgcgactgtcaaagcactttcaagaggcgttcgtttatgaaattgcttccgggtggtcatgatgactt |
201 |
Q |
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| T |
20171806 |
tctttttcttcttcggaacctatgacattgagtgcatccatcaaagcactttcaaggggcgtttggttatgaaattgcttccgagtggtcatgatgactt |
20171707 |
T |
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| Q |
202 |
cttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaatgttgaaagtaacctcttcattatcaact-ttgacct |
300 |
Q |
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| T |
20171706 |
cttcggttgcatccattttaaagcatacactcttatcttttgagtgcttaatggcttcacgaatgttgaaagttacctcttcattaacaactcttaactt |
20171607 |
T |
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| Q |
301 |
tcatgatgttatcatcgaggtcaatcatcattcgagccgtttgcatgaagt |
351 |
Q |
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| T |
20171606 |
tcataatattatcatcgaggtcaatcatcatccgtgccgtttgcatgaagt |
20171556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 17788132 - 17788212
Alignment:
| Q |
24 |
tctttcaactcttctagtttggcttgatgcgggggaatctctttcaaggtgtctagctccttcaaacattcttcaatttct |
104 |
Q |
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|||||||| || |||||||| |||| | ||| |||||||||||||| || || || |||||||| ||||||||||||||| |
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| T |
17788132 |
tctttcaattcctctagttttgctttgttcggaggaatctctttcaaagtttcaagttccttcaagcattcttcaatttct |
17788212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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