View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_13 (Length: 539)
Name: NF11737A_low_13
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 28 - 527
Target Start/End: Original strand, 7309764 - 7310255
Alignment:
| Q |
28 |
ctcataaatagcaatggagttttagctcgggtgaaaataggctctgtaaaattagtacaataaacaaacaagttccaataagctgcaatatttttcttca |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
7309764 |
ctcataaatagcaatggagttttagctcgggtgaaaataggctctataaaattagtacaataaacaaacaagttccaaaaagctgcaatattttgcttca |
7309863 |
T |
|
| Q |
128 |
taacattctgccgccatgttccatcattcatgcttgtcgcttgatgtgtttgaagctcaggttgtagatctacaattcaaaatgaaccaatttcaacaat |
227 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309864 |
tagcattctgccgccatgttccatcattcatgcttg-------atgtgtttgaagctcaggttgtagatctacaattcaaaatgaaccaatttcaacaat |
7309956 |
T |
|
| Q |
228 |
agagcgaaattcaaagacgnnnnnnntattgcagaaacacagtaaatcatgtgaagtgtttcattattctcaagattatagcctgcccacaagttacaaa |
327 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7309957 |
agagcgaaattcaaagacggtaaaa-taggacagaaacacagtaaatcatgtgaagtgtttcattattctcaagattatagcctgccaacaagttacaaa |
7310055 |
T |
|
| Q |
328 |
atgtagtacttggaacaatcagatctgtacaaaggaggtaattaacttgggaaagatggaatttgataatagagttttccccattctcaagtttccgaaa |
427 |
Q |
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||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
7310056 |
atgtagtgcttggaacaatcagatctgaacaaaggaagtaattaacttgggaaagatggaatttgataataaagttttcccctttctcaagtttccgaag |
7310155 |
T |
|
| Q |
428 |
ctcttctaattcattttcagatgcattagtaacatgaccctaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgatgtccatc |
527 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
7310156 |
ttcttctaattcattttcagatgcatcagtaacatgaccctaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgttgtgcatc |
7310255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 394 - 518
Target Start/End: Complemental strand, 7329857 - 7329734
Alignment:
| Q |
394 |
taatagagttttccccattctcaagtttccgaaactcttctaattcattttcagatgcattagtaacatgaccctaaatcagaactggatgcatcagact |
493 |
Q |
| |
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|||||||||||||| ||||||||||||||| || || | | |||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
7329857 |
taatagagttttcctcattctcaagtttccaaagttcatttcattcattt-cagattcattagttacatgaccttaaatcagaactggatgcatcagact |
7329759 |
T |
|
| Q |
494 |
ttgtgatcagatttatagaatattg |
518 |
Q |
| |
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| T |
7329758 |
ttgtgatcagatttatagaatattg |
7329734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 439 - 493
Target Start/End: Original strand, 7300843 - 7300897
Alignment:
| Q |
439 |
cattttcagatgcattagtaacatgaccctaaatcagaactggatgcatcagact |
493 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7300843 |
cattttcggatgcattagtaacatgaccctaaatcagaactggatgcatcagact |
7300897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 7330181 - 7330063
Alignment:
| Q |
42 |
tggagttttagctcgggtgaaaataggctctgtaaaattagtacaataaacaaacaagtt------ccaataagctgcaatatttttcttcataacattc |
135 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||| |
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|
| T |
7330181 |
tggagttttagctcgggtgaaaatagactat--aaaatgagtacaataaccaaacaagttgtagttccaataagctccaatatttttcttcatagcattc |
7330084 |
T |
|
| Q |
136 |
tgccgccatgttccatcattc |
156 |
Q |
| |
|
|| |||||| |||||||||| |
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|
| T |
7330083 |
cgcagccatgctccatcattc |
7330063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 7330056 - 7330012
Alignment:
| Q |
184 |
tcaggttgtagatctacaattcaaaatgaaccaatttcaacaata |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
7330056 |
tcaggttgtagatctacaattcaaaatgaacccatttaaacaata |
7330012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 13899003 - 13898963
Alignment:
| Q |
439 |
cattttcagatgcattagtaacatgaccctaaatcagaact |
479 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
13899003 |
cattttcatatgcattagtaacttgaccctaaatcagaact |
13898963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 479
Target Start/End: Complemental strand, 13569182 - 13569143
Alignment:
| Q |
440 |
attttcagatgcattagtaacatgaccctaaatcagaact |
479 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
13569182 |
attttcatatgcattagtaacttgaccctaaatcagaact |
13569143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 479
Target Start/End: Original strand, 24552759 - 24552799
Alignment:
| Q |
439 |
cattttcagatgcattagtaacatgaccctaaatcagaact |
479 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
24552759 |
cattttcatatgcattagtaacttgaccctaaatcagaact |
24552799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 479
Target Start/End: Complemental strand, 23964039 - 23964003
Alignment:
| Q |
443 |
ttcagatgcattagtaacatgaccctaaatcagaact |
479 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| |
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|
| T |
23964039 |
ttcagatgcattagtaacttgagcctaaatcagaact |
23964003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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