View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_130 (Length: 358)
Name: NF11737A_low_130
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_130 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 80 - 345
Target Start/End: Complemental strand, 37620157 - 37619892
Alignment:
| Q |
80 |
aatatggtggttactggttaattcctcccaagctaaacaaaatagttcataattcttgtagcattatttctacttagccataagactgcagtcttatata |
179 |
Q |
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| T |
37620157 |
aatatggtggttactggttaattcctcccaagctaaacaaaatagttcataattcttgtagcattatttctacttagccataagactgcagtcttttata |
37620058 |
T |
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| Q |
180 |
taataaacaataaggtccatgacaaaaatatgtcatttataattttannnnnnncaatctacaagttattttttataagcattacatgtttccctatttt |
279 |
Q |
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| T |
37620057 |
taataaacaataaggtccatgacaaaaatatgtcatttataattttatttttttcaatctacaagttattttttataagcattacatgtttccctatttt |
37619958 |
T |
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| Q |
280 |
tcaaataaaatactataggcatagaatctgtatctcttccattcaatggctagtaggtaatgatgt |
345 |
Q |
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| T |
37619957 |
tcaaataaaatactataggcatagaatttgtatctcttccattcaatggctagtaggtaatgatgt |
37619892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 37620266 - 37620208
Alignment:
| Q |
23 |
caaaaaagattgtgtcccttatcaatttcatagaggtataccaattttgctcttgttaa |
81 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37620266 |
caaaaaagatcgcatcccttatcaatttcatagaggtataccaattttgctcttgttaa |
37620208 |
T |
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