View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_131 (Length: 355)
Name: NF11737A_low_131
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_131 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 24683641 - 24683304
Alignment:
| Q |
18 |
acatcacagggtcaggccccaggagatgatactctccgttctttaatcagataaggatgctttccatgaattgctccagctctggtgcacacctgttctc |
117 |
Q |
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| T |
24683641 |
acatcacagggtcaggccccaggagatgatactctccgttctttaatcagataaggatgctttccatgaattgctccagctctggtgcacacctgttctc |
24683542 |
T |
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| Q |
118 |
tctagaaagagaatgttcactggaaagcacagaccagctnnnnnnngagtgagctaatcaaggggaatacctgttcgaaaataaagtccgatcggaccaa |
217 |
Q |
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| T |
24683541 |
tctagaaagagaatgttcactggaaagcacagaccagctaaaaaaagagtgagctaatcaaggggaatacctgttcgaaaataaagtccgatcggaccaa |
24683442 |
T |
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| Q |
218 |
gacggaaagattcatacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtagaacctccttgagtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24683441 |
gacggaaagattcatacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtagaaactccttgagtt |
24683342 |
T |
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| Q |
318 |
aagcataaataagtaccccagaggctacgagaaagatc |
355 |
Q |
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| T |
24683341 |
aagcataaataagtaccccagaggctacgagaaagatc |
24683304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 205 - 355
Target Start/End: Original strand, 16060442 - 16060592
Alignment:
| Q |
205 |
ccgatcggaccaagacggaaagattcatacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtaga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16060442 |
ccgatcggaccaagacggaaagattcatacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtaga |
16060541 |
T |
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| Q |
305 |
acctccttgagttaagcataaataagtaccccagaggctacgagaaagatc |
355 |
Q |
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| T |
16060542 |
aactccttgagttaagcataaataagtaccccagaggctacaagaaagatc |
16060592 |
T |
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