View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_133 (Length: 354)

Name: NF11737A_low_133
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_133
NF11737A_low_133
[»] chr3 (4 HSPs)
chr3 (1-336)||(4480680-4481015)
chr3 (41-281)||(12527442-12527682)
chr3 (13-325)||(14484510-14484822)
chr3 (16-182)||(42625193-42625359)
[»] chr2 (3 HSPs)
chr2 (2-336)||(30847470-30847804)
chr2 (2-111)||(1901698-1901807)
chr2 (61-153)||(20608452-20608544)
[»] chr1 (4 HSPs)
chr1 (2-315)||(45599896-45600209)
chr1 (66-167)||(28384260-28384361)
chr1 (92-209)||(17177970-17178087)
chr1 (66-167)||(38489757-38489859)
[»] chr7 (5 HSPs)
chr7 (1-336)||(8863008-8863343)
chr7 (1-336)||(13639266-13639590)
chr7 (1-142)||(29961121-29961262)
chr7 (75-268)||(17207004-17207198)
chr7 (58-269)||(41865347-41865558)
[»] chr8 (5 HSPs)
chr8 (7-329)||(13812434-13812756)
chr8 (16-251)||(13701141-13701376)
chr8 (66-167)||(36306926-36307027)
chr8 (92-167)||(22897004-22897079)
chr8 (16-142)||(13700963-13701089)
[»] chr4 (2 HSPs)
chr4 (10-209)||(27010514-27010713)
chr4 (145-269)||(33479467-33479591)
[»] chr5 (2 HSPs)
chr5 (145-238)||(22787020-22787113)
chr5 (161-271)||(18610215-18610325)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 4480680 - 4481015
Alignment:
Q  1 gaccacacaccagcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcg 100  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4480680 gaccacacaccagtagaatttcaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcg 4480779  T
Q  101 tcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaa 200  Q
    |||||||||||||||||||||||||||||||| |||||||||  |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  4480780 tcgggcatgaaactcctttgtcttgcaagcgagctctagtcggtaaacatccccgacacatacgcactaacaaatttttaacttttggtggaaccttcaa 4480879  T
Q  201 gcaccaaatgttattccaactacccggacgatgaagatatgaaacatccattaatttttccacacataaacgataagcacttcacattgtataacaacca 300  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  4480880 acgccaaatgttattccaactacccggacgatgaagatatgaaacatccattaatttttccacacataaacgataagcacttcgcactgtataacaacca 4480979  T
Q  301 ttcctttttgctttctaaataagacgatccggatgt 336  Q
    ||||||| ||||||| |||||||||||||| |||||    
T  4480980 ttcctttctgctttccaaataagacgatcctgatgt 4481015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 41 - 281
Target Start/End: Original strand, 12527442 - 12527682
Alignment:
Q  41 ggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgtcgggcatgaaactcctttgtcttgcaagcgaactctagt 140  Q
    |||| |||||||  |||||||  || ||||||| ||||  ||| |||||| ||||||| ||||| || || || ||||| |||| |||||||||||||||    
T  12527442 ggcattcaaacagtaaatgatccaagtcctcatgatcaacaccgcaactttcacaatttgtcggacacgagacccctttatctttcaagcgaactctagt 12527541  T
Q  141 cgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaagcaccaaatgttattccaactacccggacgatgaagatat 240  Q
    ||  |||||||||| ||||||||||||||||| ||||||||| ||||| |||||||| || ||||||||||| | ||||||||| ||| || |||| |      
T  12527542 cggtaaacatccccgacacatacgccataacagatttttaacctttggcggaacctttaaacaccaaatgttctgccaactacctggatgacgaaggtga 12527641  T
Q  241 gaaacatccattaatttttccacacataaacgataagcact 281  Q
    ||||||||||| |  | |||||||||||| ||||| |||||    
T  12527642 gaaacatccatcagctcttccacacataaccgatatgcact 12527682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 14484822 - 14484510
Alignment:
Q  13 gcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgtcgggcatgaaa 112  Q
    ||||||||| |||| || |||| |||  | || |||||||||| |||||||||||| |||| ||||| ||| |||||| ||||||||||||| || || |    
T  14484822 gcagaattccaaacatggatagaaaaaggacattcaaacaacagatgatttaaatcttcatgatcagcaccgcaactttcacaattcgtcggacacgaga 14484723  T
Q  113 ctcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaagcaccaaatgtt 212  Q
    | ||||| |||||||| ||||||| |||||  || ||||||| |||||||| |||||| | |||||| || ||||| | ||| |||||  ||||||| |     
T  14484722 cccctttatcttgcaaacgaactcaagtcggtaagcatccccgacacatacaccataagagatttttcacctttggcgaaactttcaaataccaaatatg 14484623  T
Q  213 attccaactacccggacgatgaagatatgaaacatccattaatttttccacacataaacgataagcacttcacattgtataacaaccattcctttttgct 312  Q
     | |||| |||| || | | ||||||  |||||||| ||||||| ||||||| |||||||||| ||||| | ||  | |||||||||||| ||||  |||    
T  14484622 ctgccaattacctggcctacgaagatgggaaacatcaattaattcttccacatataaacgatatgcactccgcaccgaataacaaccatttctttccgct 14484523  T
Q  313 ttctaaataagac 325  Q
    ||| ||| |||||    
T  14484522 ttccaaacaagac 14484510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 42625359 - 42625193
Alignment:
Q  16 gaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgtcgggcatgaaactc 115  Q
    |||||| |||||||||| |||||  | || |||||||  ||||||| ||| ||||||| ||||  ||| |||||  ||||||| ||||| || || || |    
T  42625359 gaattccaaacttgaatcgcaaaaggacattcaaacagtaaatgatctaagtcctcatgatcaacaccgcaactctcacaatttgtcggacacgagaccc 42625260  T
Q  116 ctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaac 182  Q
    |||| ||||||||||||||||||||||  |||||| ||| ||||||||||||||| | |||||||||    
T  42625259 ctttatcttgcaagcgaactctagtcggtaaacattcccgacacatacgccataaaagatttttaac 42625193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 2 - 336
Target Start/End: Original strand, 30847470 - 30847804
Alignment:
Q  2 accacacaccagcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgt 101  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30847470 accacacaccagcagaattccaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgt 30847569  T
Q  102 cgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaag 201  Q
     ||||||||||||||||||||||||||||||||||||||||  |||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||    
T  30847570 tgggcatgaaactcctttgtcttgcaagcgaactctagtcggtaaacatccctgacacatatgccataacaaatttttaacttttggtggaaccttcaag 30847669  T
Q  202 caccaaatgttattccaactacccggacgatgaagatatgaaacatccattaatttttccacacataaacgataagcacttcacattgtataacaaccat 301  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||||||||    
T  30847670 cgccaaatgttattccaactacccggacgatgaagatatgaaacatccactaattcttccacacataaaccataagcacttcgcactgtataacaaccat 30847769  T
Q  302 tcctttttgctttctaaataagacgatccggatgt 336  Q
    |||||| ||||||| |||||||||||||| |||||    
T  30847770 tcctttctgctttccaaataagacgatcctgatgt 30847804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 1901807 - 1901698
Alignment:
Q  2 accacacaccagcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgt 101  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1901807 accacacaccagcaaaattccaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaactcccacaattcgt 1901708  T
Q  102 cgggcatgaa 111  Q
    || |||||||    
T  1901707 cgagcatgaa 1901698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 20608544 - 20608452
Alignment:
Q  61 tttaaatcctcataatcagaaccacaacttccacaattcgtcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccc 153  Q
    |||| ||||||||||||| ||| |||  || |||||||||| || || ||||| || ||||||||||  ||||||||||| |  |||||||||    
T  20608544 tttagatcctcataatcataactacagtttgcacaattcgttggacacgaaacccccttgtcttgcatccgaactctagtgggaaaacatccc 20608452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 45600209 - 45599896
Alignment:
Q  2 accacacaccagcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgt 101  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45600209 accacacaccagcagaattcaaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagagccacaacttccacaattcgt 45600110  T
Q  102 cgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaag 201  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  45600109 cgggcatgaaactcttttgtcttgcaagcgaactctagtcggtaaacatcctcgacacatatgccataagaaatttttaacttttggtggaaccttcaag 45600010  T
Q  202 caccaaatgttattccaactacccggacgatgaagatatgaaacatccattaatttttccacacataaacgataagcacttcacattgtataacaaccat 301  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || | ||||||||||||    
T  45600009 cgccaaatgttattccaactacccggacgatgaagatatgaaacatccactaattcttccacacataaacgataagcacttcgcactatataacaaccat 45599910  T
Q  302 tcctttttgctttc 315  Q
    |||||| |||||||    
T  45599909 tcctttctgctttc 45599896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 28384361 - 28384260
Alignment:
Q  66 atcctcataatcagaaccacaacttccacaattcgtcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgc 165  Q
    ||||||||| |||  || ||||||  ||||||||||||| || ||||| |||||||||||||| ||||||||||| | ||||||||||| ||||||||||    
T  28384361 atcctcatactcatgactacaactagcacaattcgtcggacaagaaacacctttgtcttgcaaccgaactctagtaggcaaacatcccctacacatacgc 28384262  T
Q  166 ca 167  Q
    ||    
T  28384261 ca 28384260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 17178087 - 17177970
Alignment:
Q  92 cacaattcgtcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtgg 191  Q
    ||||||| ||||| || || || ||||| |||||||| |||||||||||||  || ||||||| ||||||||||||||||| ||||||||| || ||  |    
T  17178087 cacaatttgtcggacacgagacccctttatcttgcaaacgaactctagtcggtaagcatccccgacacatacgccataacagatttttaaccttcggcag 17177988  T
Q  192 aaccttcaagcaccaaat 209  Q
    |||||| || ||||||||    
T  17177987 aacctttaaacaccaaat 17177970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 38489757 - 38489859
Alignment:
Q  66 atcctcataatcagaaccacaacttccacaattcgtcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacat-ccccaacacatacg 164  Q
    ||||||||| |||  || ||||||  ||||||| ||||| || ||||| ||||||||||||||  |||||||||| | ||||||| |||| |||||||||    
T  38489757 atcctcatactcatgactacaactagcacaatttgtcggacaagaaacacctttgtcttgcaacagaactctagtaggcaaacatccccctacacatacg 38489856  T
Q  165 cca 167  Q
    |||    
T  38489857 cca 38489859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 8863008 - 8863343
Alignment:
Q  1 gaccacacaccagcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcg 100  Q
    ||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||    
T  8863008 gaccacacaccagtagaattccaaatttgaatagaaaatcggcactcaaacaacaaatgatttaaatcatcatgatcataaccacaacttccacaattcg 8863107  T
Q  101 tcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||| |  ||||||||||||||||||||||||||    
T  8863108 tcgggcatgaaactcctttgtcttgcaagcgaactctagtcggtaaacatccccgacacatacgccataaaatttttttaacttttggtggaaccttcaa 8863207  T
Q  201 gcaccaaatgttattccaactacccggacgatgaagatatgaaacatccattaatttttccacacataaacgataagcacttcacattgtataacaacca 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||    
T  8863208 gcgccaaatgttattccaactacccggacgatgaagatatgaaacatccaccaattcttccacacataaacgataagcacttcgcactgtataacaacca 8863307  T
Q  301 ttcctttttgctttctaaataagacgatccggatgt 336  Q
    ||||||| ||||||| |||||||| ||||| |||||    
T  8863308 ttcctttctgctttccaaataagatgatcctgatgt 8863343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 13639266 - 13639590
Alignment:
Q  1 gaccacacaccagcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcg 100  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  13639266 gaccacacaccaacagaattccaaacttgaatagcaaatcggcactcaaacaataaatgatttaaatcctcataatcagaaccataacttccacaattcg 13639365  T
Q  101 tcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||         |     
T  13639366 tcgggcatgaaactcctttgtcttgcaagcgaactctagtcggtaaacatccccgacacatacgccataacaaatttttaacttttggt---------at 13639456  T
Q  201 gcaccaaatgttattccaactacccggacgatgaagatatgaaacatccattaatttttccacacataaacgataagcacttcacattgtataacaacca 300  Q
    |  | ||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  13639457 g--ctaaatgttattccaactacccggacgatgaagatatgatacatccactaattcttccacacataaacgataagcacttcgcattgtataacaacca 13639554  T
Q  301 ttcctttttgctttctaaataagacgatccggatgt 336  Q
    ||||||| ||||||| |||||||||||||| |||||    
T  13639555 ttcctttctgctttccaaataagacgatcccgatgt 13639590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 29961262 - 29961121
Alignment:
Q  1 gaccacacaccagcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcg 100  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29961262 gaccacacatcagcagaattccaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcg 29961163  T
Q  101 tcgggcatgaaactcctttgtcttgcaagcgaactctagtcg 142  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  29961162 tcgggcatgaaactcctttgtcttgcaagcgaaatctagtcg 29961121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 268
Target Start/End: Original strand, 17207004 - 17207198
Alignment:
Q  75 atcagaaccacaacttccacaattcgtcgggcatgaaac-tcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaa 173  Q
    ||||| ||| ||| |||||||||| |||||||| || || |||||| |||||||||| |||||| || ||||||||||| ||||||||||||||||||||    
T  17207004 atcagcaccgcaagttccacaatttgtcgggcacgagacctcctttatcttgcaagcaaactcttgttgacaaacatccgcaacacatacgccataacaa 17207103  T
Q  174 atttttaacttttggtggaaccttcaagcaccaaatgttattccaactacccggacgatgaagatatgaaacatccattaatttttccacacata 268  Q
    ||||| ||||||||| ||||| || || | |||||| || | |||| |||| |||||| | || |  || ||||| ||||| | |||||||||||    
T  17207104 attttaaacttttggcggaacttttaaacgccaaatattctaccaattacctggacgacggaggtgagacacatcaattaactcttccacacata 17207198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 58 - 269
Target Start/End: Original strand, 41865347 - 41865558
Alignment:
Q  58 tgatttaaatcctcataatcagaaccacaacttccacaattcgtcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaac 157  Q
    ||||| || ||||||| ||||  ||| ||| |||||||||| ||||| || || || ||||| |||||||||| ||||||||| |  |||||||| | ||    
T  41865347 tgattcaagtcctcatgatcatcaccgcaagttccacaatttgtcggacacgagacccctttatcttgcaagcaaactctagttggtaaacatccacgac 41865446  T
Q  158 acatacgccataacaaatttttaacttttggtggaaccttcaagcaccaaatgttattccaactacccggacgatgaagatatgaaacatccattaattt 257  Q
    ||||||||||||||| |||||||||||| |   ||||||| || | |||||| || | |||| |||| |||||| | ||||  || ||||| |||||||     
T  41865447 acatacgccataacagatttttaactttcgccagaacctttaaacgccaaatattctgccaattaccgggacgacggagatgagacacatcaattaattc 41865546  T
Q  258 ttccacacataa 269  Q
    ||||||||||||    
T  41865547 ttccacacataa 41865558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 13812434 - 13812756
Alignment:
Q  7 acaccagcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgtcgggc 106  Q
    |||||||||| |||| |||| || |||| |||  |||||||||| | ||| |||||||||||||||||||||||| | |||||| ||||||| ||||| |    
T  13812434 acaccagcagcattccaaacctggatagaaaaagggcactcaaaaagcaagtgatttaaatcctcataatcagaatcgcaacttgcacaatttgtcggac 13812533  T
Q  107 atgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaagcacca 206  Q
    ||||||||||||| |||||||| ||||||||||| |  |  ||||||| |||||| |||||||||| |||||| ||||| || |||||||| || | |||    
T  13812534 atgaaactcctttatcttgcaaacgaactctagttggaaggcatcccctacacattcgccataacagatttttgactttcggaggaacctttaaacgcca 13812633  T
Q  207 aatgttattccaactacccggacgatgaagatatgaaacatccattaatttttccacacataaacgataagcacttcacattgtataacaaccattcctt 306  Q
    ||| | ||||||| |||| || |||||  |||  |||||||||| ||||| ||||||||||||  |||||||||| |  |  | ||||||||||||||||    
T  13812634 aatatcattccaattacctgggcgatggtgatgagaaacatccactaattcttccacacataagtgataagcactccttaccgaataacaaccattcctt 13812733  T
Q  307 tttgctttctaaataagacgatc 329  Q
    |  |||||| |||| | ||||||    
T  13812734 tccgctttccaaatgaaacgatc 13812756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 13701141 - 13701376
Alignment:
Q  16 gaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgtcgggcatgaaactc 115  Q
    |||||| |||||||||| |||||  |||| |||||||  ||||||| | | ||||||| ||||| ||  |||||  ||||||| || || || || || |    
T  13701141 gaattccaaacttgaattgcaaaagggcattcaaacagtaaatgatctcagtcctcatgatcagcactgcaactctcacaatttgttggacacgagaccc 13701240  T
Q  116 ctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaagcaccaaatgttatt 215  Q
     ||| ||||||||||||||||||||||  || ||||||| ||||||||||||||||| ||||||||| || ||  ||||||| || | ||||||||| |     
T  13701241 atttatcttgcaagcgaactctagtcggtaatcatccccgacacatacgccataacagatttttaaccttcggcagaacctttaaacgccaaatgttctg 13701340  T
Q  216 ccaactacccggacgatgaagatatgaaacatccat 251  Q
    ||||||||| |||||| |||| |  |||||||||||    
T  13701341 ccaactacctggacgacgaaggtgagaaacatccat 13701376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 36306926 - 36307027
Alignment:
Q  66 atcctcataatcagaaccacaacttccacaattcgtcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgc 165  Q
    ||||||||| |||  || ||||||  ||||||||||||| || | ||| |||||||||||||| ||||||||||| | ||||||||||| ||||||||||    
T  36306926 atcctcatactcatgactacaactagcacaattcgtcggacaagtaacacctttgtcttgcaaccgaactctagtaggcaaacatcccctacacatacgc 36307025  T
Q  166 ca 167  Q
    ||    
T  36307026 ca 36307027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 22897079 - 22897004
Alignment:
Q  92 cacaattcgtcgggcatgaaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgcca 167  Q
    ||||||||||||| || ||||| |||||||||||||| ||||||||||| | ||| ||||||| ||||||||||||    
T  22897079 cacaattcgtcggacaagaaacacctttgtcttgcaaccgaactctagtaggcaagcatcccctacacatacgcca 22897004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 13700963 - 13701089
Alignment:
Q  16 gaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgtcgggcatgaaactc 115  Q
    |||||| |||||||||| |||||  |||| |||||||  ||||||| ||| ||||||| ||||| ||  |||||  ||||||| || || || || || |    
T  13700963 gaattccaaacttgaatcgcaaaagggcattcaaacagtaaatgatctaagtcctcatgatcagcactgcaactctcacaatttgttggacacgagaccc 13701062  T
Q  116 ctttgtcttgcaagcgaactctagtcg 142  Q
    |||| ||||||||||||||||||||||    
T  13701063 ctttatcttgcaagcgaactctagtcg 13701089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 27010514 - 27010713
Alignment:
Q  10 ccagcagaattctaaacttgaatagcaaatcggcactcaaacaacaaatgatttaaatcctcataatcagaaccacaacttccacaattcgtcgggcatg 109  Q
    ||||| |||||| ||||||||||||||||  | || |||||||  |||||||  || ||||||| ||||| ||| |||||  ||||||| |||   || |    
T  27010514 ccagctgaattccaaacttgaatagcaaaaggacattcaaacagtaaatgatacaagtcctcatgatcagcaccgcaactctcacaatttgtcatacacg 27010613  T
Q  110 aaactcctttgtcttgcaagcgaactctagtcgacaaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaagcaccaaat 209  Q
    | || ||||| |||||||| || ||||||||||  || ||||||| ||||||||||||||||| ||||||||| || ||  ||||||| || ||||||||    
T  27010614 agacccctttatcttgcaaacgtactctagtcggtaagcatccccgacacatacgccataacatatttttaaccttcggctgaacctttaaacaccaaat 27010713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 269
Target Start/End: Complemental strand, 33479591 - 33479467
Alignment:
Q  145 aaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaagcaccaaatgttattccaactacccggacgatgaagatatgaaa 244  Q
    |||||||||| ||||||  |||||| |||||||||||| || || ||||||| ||| |||||||  || |||||| |||| |||||| ||||||  ||||    
T  33479591 aaacatcccctacacatttgccatagcaaatttttaaccttcggcggaacctccaaacaccaaaaattcttccaattacctggacgacgaagatgagaaa 33479492  T
Q  245 catccattaatttttccacacataa 269  Q
    |||| ||||| | ||||||||||||    
T  33479491 catcaattaactcttccacacataa 33479467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 22787020 - 22787113
Alignment:
Q  145 aaacatccccaacacatacgccataacaaatttttaacttttggtggaaccttcaagcaccaaatgttattccaactacccggacgatgaagat 238  Q
    ||||| |||| |||||||| |||||||||||  |||| ||||||||||||||| |  | |||||| |  |||||| | ||||||||||||||||    
T  22787020 aaacaacccctacacatacaccataacaaatgcttaatttttggtggaaccttaagccgccaaatatccttccaattgcccggacgatgaagat 22787113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 271
Target Start/End: Complemental strand, 18610325 - 18610215
Alignment:
Q  161 tacgccataacaaatttttaacttttggtggaaccttcaagcaccaaatgttattccaactacccggacgatgaagatatgaaacatccattaatttttc 260  Q
    |||||||||||| ||  ||||  ||||| |||||||| |  |||||||| |  |||||| | ||||| ||||||||||  |||||||| ||||||| |||    
T  18610325 tacgccataacagatgcttaatctttggcggaaccttaagccaccaaatatctttccaattgcccggtcgatgaagatgagaaacatcgattaattcttc 18610226  T
Q  261 cacacataaac 271  Q
     ||||||||||    
T  18610225 aacacataaac 18610215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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