View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_134 (Length: 353)
Name: NF11737A_low_134
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_134 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 47885474 - 47885141
Alignment:
| Q |
20 |
caggtagatccatctgcaaccctatttgtgaatgattatcatgttgaagatggagacgacatgaattcatcaccagaaaaatacacacaacagattcttg |
119 |
Q |
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| T |
47885474 |
caggtagatccatctgcaaccctatttgtgaatgattatcatgttgaagatggagacgacatgaattcatcaccagaaaaatacacacaacagattcttg |
47885375 |
T |
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| Q |
120 |
atttgcaagatcaaggtgcaccggttgggggaataggaattcaaggtcacattgatagtcctgtggggcctattgtttgtgctgcactcgataagttggc |
219 |
Q |
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| T |
47885374 |
atttgcaagatcaaggtgcaccggttgggggaataggaattcaaggtcacattgatagtcctgtggggcctattgtttgtgctgcactcgataagttggc |
47885275 |
T |
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| Q |
220 |
tactcttggtcagccaatttggtttaccgagcttgatgtgtcttccactaatgaatatgttcgaggtgatgatttggaagtgatgttgcgcgaagctatg |
319 |
Q |
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| T |
47885274 |
tactcttggtcagccaatttggtttaccgagcttgatgtgtcttccactaatgaatatgttcgaggtgatgatttggaagtgatgttgcgcgaagctatg |
47885175 |
T |
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| Q |
320 |
gcacaccctgctgttgatggtgtaatgctatggg |
353 |
Q |
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| T |
47885174 |
gcacaccctgctgttgatggtgtaatgctatggg |
47885141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 108 - 336
Target Start/End: Original strand, 4623703 - 4623931
Alignment:
| Q |
108 |
aacagattcttgatttgcaagatcaaggtgcaccggttgggggaataggaattcaaggtcacattgatagtcctgtggggcctattgtttgtgctgcact |
207 |
Q |
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| T |
4623703 |
aacacattcttgatttgcaagaacaaggtgcacctgttggtggaattggaattcaaggacacatagatagtccagttgggcctgttgtttgttcttcact |
4623802 |
T |
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| Q |
208 |
cgataagttggctactcttggtcagccaatttggtttaccgagcttgatgtgtcttccactaatgaatatgttcgaggtgatgatttggaagtgatgttg |
307 |
Q |
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| T |
4623803 |
tgataaattaggtattcttggtttaccgatatggtttacagaacttgatgtgtcttctatgaatgaatatgtgagaggtgatgatcttgaagttatgctt |
4623902 |
T |
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| Q |
308 |
cgcgaagctatggcacaccctgctgttga |
336 |
Q |
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| T |
4623903 |
agggaagccatggctcaccctgctgttga |
4623931 |
T |
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