View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_137 (Length: 352)

Name: NF11737A_low_137
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_137
NF11737A_low_137
[»] chr5 (3 HSPs)
chr5 (144-262)||(15561408-15561526)
chr5 (283-352)||(15561565-15561634)
chr5 (151-229)||(39467604-39467682)
[»] chr4 (9 HSPs)
chr4 (150-262)||(6056931-6057043)
chr4 (283-351)||(6056819-6056887)
chr4 (150-253)||(32138779-32138881)
chr4 (150-251)||(14527519-14527620)
chr4 (150-195)||(20143283-20143328)
chr4 (150-188)||(26393404-26393442)
chr4 (151-196)||(32137988-32138033)
chr4 (150-251)||(51387068-51387169)
chr4 (150-194)||(13924797-13924841)
[»] chr7 (4 HSPs)
chr7 (151-261)||(37783414-37783524)
chr7 (151-229)||(42818518-42818596)
chr7 (150-191)||(46491691-46491732)
chr7 (155-251)||(36611681-36611777)
[»] chr8 (3 HSPs)
chr8 (151-261)||(9929205-9929315)
chr8 (172-261)||(42664733-42664822)
chr8 (150-227)||(4402254-4402331)
[»] chr3 (3 HSPs)
chr3 (151-261)||(27982979-27983083)
chr3 (150-195)||(24515012-24515057)
chr3 (152-188)||(46883770-46883806)
[»] chr1 (1 HSPs)
chr1 (150-260)||(1099895-1100008)
[»] chr2 (1 HSPs)
chr2 (150-239)||(10173940-10174029)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 15561408 - 15561526
Alignment:
Q  144 tatgtagattctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgata 243  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15561408 tatgtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagattaatcaagttcacatatgata 15561507  T
Q  244 ttatacactagatcacacc 262  Q
    |||||||||||||||||||    
T  15561508 ttatacactagatcacacc 15561526  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 15561565 - 15561634
Alignment:
Q  283 cttccttccgttttgttcatgaactcataaatcatgtacaccaacagttacggcgcctagggaaaattga 352  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||    
T  15561565 cttccttccgttttgttcatgaactcataaaccatgtacaccaacagttacatcgcctagggaaaattga 15561634  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 39467682 - 39467604
Alignment:
Q  151 attctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaa 229  Q
    ||||||||||||||| || | ||||||||||| ||||||| |||||  || ||| | | ||||||||||||||||||||    
T  39467682 attctagggtgagggtttaattaagtccctcatcggtggatcacttataataacaaataagaaccattagattaatcaa 39467604  T

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Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 6057043 - 6056931
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgatattatac 249  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  6057043 gattctagggtgagggttctactaagtccctcaccggtggaccacttcgaacaaccattaagaaccattaaattaatcaagttcacatatgatattatac 6056944  T
Q  250 actagatcacacc 262  Q
    |||||||||||||    
T  6056943 actagatcacacc 6056931  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 6056887 - 6056819
Alignment:
Q  283 cttccttccgttttgttcatgaactcataaatcatgtacaccaacagttacggcgcctagggaaaattg 351  Q
    |||||||||||| |||||||||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  6056887 cttccttccgttctgttcatgaactcataaaccatgtacaccaacaattacagcgcctagggaaaattg 6056819  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 32138881 - 32138779
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgatattatac 249  Q
    ||||||| |||||||||| ||  || || |||||||||||||||||    ||||| ||| ||| ||||||||||||||||||||||||||  |||| |||    
T  32138881 gattctaaggtgagggctctatcaaatcactcaccggtggaccactatagacaacaattaaga-ccattagattaatcaagttcacatatcctattctac 32138783  T
Q  250 acta 253  Q
    ||||    
T  32138782 acta 32138779  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 14527620 - 14527519
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgatattatac 249  Q
    |||||||||||||||| |  | ||||||||||||||||| ||||||  ||| ||  ||| |||  ||||||||||||||||| || ||||  ||||||||    
T  14527620 gattctagggtgagggatcaattaagtccctcaccggtgaaccactatgaataataattaagagtcattagattaatcaagtacatatatcttattatac 14527521  T
Q  250 ac 251  Q
    ||    
T  14527520 ac 14527519  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 20143283 - 20143328
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccact 195  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||    
T  20143283 gattctagggtgagggctcaactaagtccctcaccggtgtaccact 20143328  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 26393442 - 26393404
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtg 188  Q
    |||||||||||||||||| || |||||||||||||||||    
T  26393442 gattctagggtgagggctctattaagtccctcaccggtg 26393404  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 32137988 - 32138033
Alignment:
Q  151 attctagggtgagggctttactaagtccctcaccggtggaccactt 196  Q
    ||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  32137988 attctagggtgagggctctaccaagttcctctccggtggaccactt 32138033  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 51387169 - 51387068
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgatattatac 249  Q
    |||| ||||||||||| |  | || |||||||||||||| |||||| |||| ||  ||| | |  ||||||||||||||||| |||||||  ||||||||    
T  51387169 gattatagggtgagggatcaattacgtccctcaccggtgaaccactacgaataataattaaaagtcattagattaatcaagtacacatatcttattatac 51387070  T
Q  250 ac 251  Q
    ||    
T  51387069 ac 51387068  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 13924797 - 13924841
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccac 194  Q
    ||||||||||||||||||  | ||| |||||||||||||||||||    
T  13924797 gattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 37783524 - 37783414
Alignment:
Q  151 attctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgatattataca 250  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| | ||||||| |||||||||| |||||||||||||||    
T  37783524 attctagggtgagggctctactaagtccctcaccggtggaccacttggaacaactattgagaatcgttagattgatcaagttcatatatgatattataca 37783425  T
Q  251 ctagatcacac 261  Q
     ||||||||||    
T  37783424 gtagatcacac 37783414  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 42818596 - 42818518
Alignment:
Q  151 attctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaa 229  Q
    ||||||||||||||| |  | ||||||||||||||||||| |||||  || ||| | | |||| |||||||||||||||    
T  42818596 attctagggtgagggttcaattaagtccctcaccggtggatcacttataataacaaataagaatcattagattaatcaa 42818518  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 46491732 - 46491691
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggac 191  Q
    |||||||||||||||| |  ||||||||||||||||||||||    
T  46491732 gattctagggtgagggttcaactaagtccctcaccggtggac 46491691  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 36611777 - 36611681
Alignment:
Q  155 tagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgatattatacac 251  Q
    ||||||||||| |  | ||||||||||| | ||| ||||||   |||||| ||| |||| | ||||||||||||||| |||||||  ||||||||||    
T  36611777 tagggtgagggttcaattaagtccctcatcagtgaaccactgtaaacaacaattaagaatcgttagattaatcaagtgcacatattttattatacac 36611681  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 9929205 - 9929315
Alignment:
Q  151 attctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgatattataca 250  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| | ||||||| |||||||||| |||||||||||||||    
T  9929205 attctaaggtgagggctctactaagtccctcaccggtggaccacttggaacaactattgagaatcgttagattgatcaagttcatatatgatattataca 9929304  T
Q  251 ctagatcacac 261  Q
     ||||||||||    
T  9929305 gtagatcacac 9929315  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 42664822 - 42664733
Alignment:
Q  172 taagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgatattatacactagatcacac 261  Q
    ||||||||||  |||||||||||||||||||||||| ||||  ||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  42664822 taagtccctcgtcggtggaccacttcgaacaaccatcgagagtcattagattgatcaaattcatatatgatattacacactagatcacac 42664733  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 4402331 - 4402254
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatc 227  Q
    |||||||||||||||| | || ||||||||||||||||| ||||||| ||||||| |   ||| ||||||||||||||    
T  4402331 gattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaacaagagccattagattaatc 4402254  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 27983083 - 27982979
Alignment:
Q  151 attctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatatgatattataca 250  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||     ||||| | ||||||| |||||||||| ||||||||| |||||    
T  27983083 attctagggtgagggctctactaagtctctca-cggtggaccacttggaacaa-----gagaatcgttagattgatcaagttcatatatgatataataca 27982990  T
Q  251 ctagatcacac 261  Q
     ||||||||||    
T  27982989 gtagatcacac 27982979  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 24515057 - 24515012
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccact 195  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||    
T  24515057 gattctagggtgagggagttattaagtccctcaccggtggaccact 24515012  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 46883770 - 46883806
Alignment:
Q  152 ttctagggtgagggctttactaagtccctcaccggtg 188  Q
    |||||||||||||||| || |||||||||||||||||    
T  46883770 ttctagggtgagggctctattaagtccctcaccggtg 46883806  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 1099895 - 1100008
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagat---taatcaagttcacatatgatatta 246  Q
    |||||||||||||| | | || |||||||||||||| || ||||||  ||| ||  ||||||| |||||||||   | |||||||||||||||| |||||    
T  1099895 gattctagggtgagagttctattaagtccctcaccgatgaaccactctgaataattattgagagccattagatcgatcatcaagttcacatatgctatta 1099994  T
Q  247 tacactagatcaca 260  Q
     |||||||||||||    
T  1099995 cacactagatcaca 1100008  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 10173940 - 10174029
Alignment:
Q  150 gattctagggtgagggctttactaagtccctcaccggtggaccacttcgaacaaccattgagaaccattagattaatcaagttcacatat 239  Q
    |||||||||||||||| | |  ||||||||||||||||| ||||| | ||||||| |   ||| ||||||||||||||||| ||| ||||    
T  10173940 gattctagggtgagggttctgttaagtccctcaccggtgaaccaccttgaacaacaaacaagagccattagattaatcaagctcaaatat 10174029  T

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