View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_14 (Length: 530)
Name: NF11737A_low_14
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_14 |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 292 - 530
Target Start/End: Complemental strand, 177287 - 177049
Alignment:
| Q |
292 |
agctccttctcactacctacttcaacatcatcctcctcgagaccaaactcttcaacaaccctccgctccacttcaatgtcacctcctacacccgtactaa |
391 |
Q |
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| T |
177287 |
agctccttctcactacctacttcaacatcatcctcctcgagatcaaactcttcaacaaccctccgctccacttcaatgtcacctcctacacccgtactaa |
177188 |
T |
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| Q |
392 |
ttaccttaccactccttgttgttatggctttgcaatgctctttcccttttgggttgtcttgagtgttggcggtgaacgctcctccttgttggttggcttg |
491 |
Q |
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| T |
177187 |
ttaccttaccactccttgttgttatggctttgcaatgctctttcccttttgggttgtcttgagtgttggcggtgaacgctcctccttgttggttggcttg |
177088 |
T |
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| Q |
492 |
agacatgtgttgagccatttgacccacttgtgtttcaag |
530 |
Q |
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| T |
177087 |
agacatgtgttgagccatttgacccacttgtgtttcaag |
177049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 177578 - 177385
Alignment:
| Q |
1 |
tcttcatcatgaattctcctcttcttggaaagcatgtctttcatgaacttagcatacgccggcatttgctccaaggcttccgagaatggaatgtcaattt |
100 |
Q |
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| T |
177578 |
tcttcatcatgaattctcctcttcttggaaagcatgtctttcatgaacttagcatacgccggcatttgctccaaggcttccgagaatggaatgtcaattt |
177479 |
T |
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| Q |
101 |
gcaatttcttgaagagctcaagaaaccttgcgtattgcctttctttatccttctttgatggagcatgtgggtaaggtaagtgttgattcaacac |
194 |
Q |
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| T |
177478 |
gcaatttcttgaagagctcaagaaaccttgcgtattgcttttctttatccttctttgatggagcatgtgggtaaggtaagtgttgattcaacac |
177385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 20171199 - 20171006
Alignment:
| Q |
1 |
tcttcatcatgaattctcctcttcttggaaagcatgtctttcatgaacttagcatacgccggcatttgctccaaggcttccgagaatggaatgtcaattt |
100 |
Q |
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| T |
20171199 |
tcttcatcattaattatcctcttcttgtaaagaatgtctttcatgaatttggcataagacgacatttgctccaaggcttccgaaaatggaatgtcaattt |
20171100 |
T |
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| Q |
101 |
gcaatttcttgaagagctcaagaaaccttgcgtattgcctttctttatccttctttgatggagcatgtgggtaaggtaagtgttgattcaacac |
194 |
Q |
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| T |
20171099 |
gtaacttcttgaagagttcaagaaaccttgcgtattgcctttctttttctttctttgatggagcatgtggatagggaaagtgttgagtcaacac |
20171006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 295 - 530
Target Start/End: Complemental strand, 20170872 - 20170643
Alignment:
| Q |
295 |
tccttctcactacctacttcaacatcatcctcctcgagaccaaactcttcaacaaccctccgctccacttcaatgtcacctcctacacccgtactaatta |
394 |
Q |
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| T |
20170872 |
tccttctcactacctacctcatcaccatccttatcgatatcaaagtcttcaacaaccttctgctccacttcaatgtcatcgcctacacctttaccaatta |
20170773 |
T |
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| Q |
395 |
ccttaccactccttgttgttatggctttgcaatgctctttcccttttgggttgtcttgagtgttggcggtgaacgctcctccttgttggttggcttgaga |
494 |
Q |
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| T |
20170772 |
ccttaccactccttgttgttatggctttgcactgtt------cttttgaattggcttgtgtgttggtggtgaacgctcctccttgttgggtgacttgagc |
20170679 |
T |
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| Q |
495 |
catgtgttgagccatttgacccacttgtgtttcaag |
530 |
Q |
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| T |
20170678 |
taattgttgatccatttgacccatttgtgtctcaag |
20170643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 26130987 - 26130847
Alignment:
| Q |
45 |
gaacttagcatacgccggcatttgctccaaggcttccgagaatggaatgtcaatttgcaatttcttgaagagctcaagaaaccttgcgtattgcctttct |
144 |
Q |
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| T |
26130987 |
gaactaagcatacgtcagaattttctccaaggcttccgagaatggaatattgattttcaatctcttgaaaatatcaaggaaccttgcatatttccgctct |
26130888 |
T |
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| Q |
145 |
ttatccttctttgatggagcatgtgggtaaggtaagtgttga |
186 |
Q |
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| T |
26130887 |
tt-gctttcttggttggagcatgtggatatggcaagtgttga |
26130847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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