View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_140 (Length: 348)
Name: NF11737A_low_140
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_140 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 16022568 - 16022229
Alignment:
| Q |
9 |
atgagatggacaataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatagtttatcacgaaaatgctcgtgttct |
108 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16022568 |
atgagatggataataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatagtttatcacgaaaatgctcgtgttct |
16022469 |
T |
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| Q |
109 |
tcttcatgatgagaacatatatcgtatcgaatatgtaagttttctttttaagttttacttgtctatttaaatctgctgctgaatgaagtttagtgctata |
208 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16022468 |
tcttcatgatgagaacatatatcgtattgaatatgtaagttttctttttaagttttacttgtctatttaaatctgctgctgaatgaagtttagtgttata |
16022369 |
T |
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| Q |
209 |
tgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattcaactcatggactgtggaaatgagaagcatgaagtgactgctg |
308 |
Q |
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| T |
16022368 |
tgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattcaactcatggactgtggaaatgagaagcatgaagtgactgctg |
16022269 |
T |
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| Q |
309 |
tgttagtggacccaaatttttcagcctatctgcacaatga |
348 |
Q |
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| T |
16022268 |
tgttagtggacccaaatttttcagcctatctgcacaatga |
16022229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 14389560 - 14389879
Alignment:
| Q |
13 |
gatggacaataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatagtttatcacgaaaatgctcgtgttcttctt |
112 |
Q |
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| T |
14389560 |
gatggataataagcttcttcaactatatgcatttgacaaatcaagaaagcttggaaagtttgttgatatagtttatcacgaaaattctcgtgttcttc-- |
14389657 |
T |
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| Q |
113 |
catgatgagaacatatatcgtatcgaatatgtaagt-----tttcttttt---------------aagttttac---ttgtctatttaaatctgctgctg |
189 |
Q |
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|||||||||||||||| |||| ||||||| |||| ||||||||| ||||||||| |||||||||||||| | || |
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| T |
14389658 |
-atgatgagaacatatactgtattgaatatgcaagttttcttttcttttttcattttttcattctaagttttaccttttgtctatttaaattcg----tg |
14389752 |
T |
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| Q |
190 |
aatgaagttt-----agtgctatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattcaactcatggactgtggaa |
284 |
Q |
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| T |
14389753 |
aatgaagttttaaggagtgttatatgttttgtaacatggtttattttattgcagtcaccaaaaccaaagacactttctattcaattcattgattttggaa |
14389852 |
T |
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| Q |
285 |
atgagaagcatgaagtgactgctgtgt |
311 |
Q |
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|||| ||||||||||||||| |||||| |
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| T |
14389853 |
atgaaaagcatgaagtgactactgtgt |
14389879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 13881658 - 13881515
Alignment:
| Q |
9 |
atgagatggacaataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatagtttatcacgaaaatgctcgtgttct |
108 |
Q |
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|||||||||| | |||||| |||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||| |||||||||||| ||| | |
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| T |
13881658 |
atgagatggatattaagcttcttcaactatatgcatatga-aaatcaataaaacttgaaaagtttgtcgatatagtttaccacgaaaatgcttgtg---t |
13881563 |
T |
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| Q |
109 |
tcttcatgatgagaacatatatcgtatcgaatatgtaagttttctttt |
156 |
Q |
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||| || ||| |||||||||||||||| ||||||| |||||||||||| |
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| T |
13881562 |
tctacacgattagaacatatatcgtattgaatatgcaagttttctttt |
13881515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 13881456 - 13881385
Alignment:
| Q |
199 |
tagtgctatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattcaact |
270 |
Q |
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||||| |||||||| |||||||||||||||||| | ||||| || ||||||||||| |||||||||||||| |
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| T |
13881456 |
tagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattcaact |
13881385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 13856775 - 13856717
Alignment:
| Q |
200 |
agtgctatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacact |
258 |
Q |
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|||| |||||||| ||||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
13856775 |
agtgttatatgtttggtaacatggtttatttcatagcagttaccaaaactaaagacact |
13856717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 26200170 - 26200028
Alignment:
| Q |
9 |
atgagatggacaataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatagtttatcacgaaaatgctcgtgttct |
108 |
Q |
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|||||||||| || || || |||||||||||||||||||| ||||||||||| |||||| ||| | ||| |||||||||| |||||||| |||||||| |
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| T |
26200170 |
atgagatggataacaaacttcttcaactatatgcatatgaacaatcaagaaaatctggaagcttttttgatgtagtttatcatgaaaatgcccgtgttct |
26200071 |
T |
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| Q |
109 |
tcttcatgatgagaacatatatcgtatcgaatatgtaagtttt |
151 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
26200070 |
tcttcatgatgagaacatatatcgtattgaatgtgtaagtttt |
26200028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 29623329 - 29623187
Alignment:
| Q |
9 |
atgagatggacaataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatagtttatcacgaaaatgctcgtgttct |
108 |
Q |
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|||||||||| || || || |||||||||||||||| ||| ||||||||||| |||||| ||| | |||||||||||||| |||||||| |||||||| |
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| T |
29623329 |
atgagatggataacaaacttcttcaactatatgcatgtgaacaatcaagaaaatctggaagcttttttgatatagtttatcatgaaaatgcccgtgttct |
29623230 |
T |
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| Q |
109 |
tcttcatgatgagaacatatatcgtatcgaatatgtaagtttt |
151 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
29623229 |
tcttcatgatgagaacatatatcgtattgaatgtgtaagtttt |
29623187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 26199113 - 26199023
Alignment:
| Q |
258 |
tgtctattcaactcatggactgtggaaatgagaagcatgaagtgactgctgtgttagtggacccaaatttttcagcctatctgcacaatga |
348 |
Q |
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| T |
26199113 |
tgtctattcagttgatggactatggacatgataagccagaagtgactgctgtgtcaatagatcctaatttttcaacctatttgcacaatga |
26199023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 48707230 - 48707311
Alignment:
| Q |
9 |
atgagatggacaataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatagtttatca |
90 |
Q |
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| T |
48707230 |
atgagatggttaataagcttcttcaactaaatgcataccagaaatcaagaaaacttggaaagcttgttgatatagtttatca |
48707311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 48707327 - 48707378
Alignment:
| Q |
207 |
tatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacact |
258 |
Q |
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| T |
48707327 |
tatgttatgtaacatggtttatttcattgcagtcacgaaaaccaaagacact |
48707378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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