View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_141 (Length: 347)
Name: NF11737A_low_141
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_141 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 347
Target Start/End: Complemental strand, 19973723 - 19973380
Alignment:
| Q |
5 |
tatattatgcagaatgcgaaagtactgaacaccatttcaattaagagtgtctctcacatagatttaaatgtcaagtaccaaatgatatcgaaattagctt |
104 |
Q |
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| T |
19973723 |
tatattatgcagaatgcgaaagtattgaacaccatgacaattaagagtgcatcttacatagatacaaataccaagcaccaaatgaaaacaaaatttgctt |
19973624 |
T |
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| Q |
105 |
cgtcagcaagggcctcaacaacatgtgaagtcttatttgattgatgaaaattagggcatagttgcaatagttcttatatgtctgctttttatattagagt |
204 |
Q |
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| T |
19973623 |
catcgacaagggcctcaacaacatgtaaactcttatttgattgatgacagctagggcatcgctgcattagttct--tatgtgtgctttttgtattagatt |
19973526 |
T |
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| Q |
205 |
ctaacgtatccaatgctaagatttaatggttttcaaaggc--taaacctctttcattttgactctgtcatttagattttcagatatgtattggctttcat |
302 |
Q |
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| T |
19973525 |
ctaacatatgcaatgctaagatttaatggttttcaaaggcatgagatctgtttcattttgactctgtcatttagattttcaaatatgtattggctttcat |
19973426 |
T |
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| Q |
303 |
gtattaaagggatg-cagatcctttcaactgaattgtatcttatct |
347 |
Q |
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| T |
19973425 |
gtattaaaggtatgtcagatcctttcaaccgagtcctatcttatct |
19973380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 47605458 - 47605259
Alignment:
| Q |
2 |
aaatatattatgcagaatgcgaaagtactgaacaccatttcaattaagagtgtctctcacatagatttaaatgtcaagtaccaaatgatatcgaaattag |
101 |
Q |
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| T |
47605458 |
aaatatattatgcagaattcaaaagtattgaacaccatgtcaatcaagattgcctcttctgtagatataaatgtcaagtaccaattgtcaaggaaatcag |
47605359 |
T |
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| Q |
102 |
cttcgtcagcaagggcctcaacaacatgtgaagtcttatttgattgatgaaaattagggcatagttgcaatagttcttatatgtctgctttttatattag |
201 |
Q |
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| T |
47605358 |
cctcatggacaagggcctcatcaacatgtaaactctaattt-atggatgaaagttagggcatagttgcaatagttcttatatgtctactttttctattag |
47605260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 19935645 - 19935846
Alignment:
| Q |
1 |
aaaatatattatgcagaatgcgaaagtactgaacaccatttcaattaagagtgtctctcacatagatttaaatgtcaagtaccaaatgatatcgaaatta |
100 |
Q |
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| T |
19935645 |
aaaatatattatgcagaattcagaagtattgaagaccatgtcaatcaagagcgcctcttccatagatacaaataccaagcaccaaatttggatgaaactt |
19935744 |
T |
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| Q |
101 |
gcttcgtcagcaagggcctcaacaacatgtgaagtcttatttgattgatgaaaattagggcatagttgcaatagttcttatatgtctgctttttatatta |
200 |
Q |
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| T |
19935745 |
gcttcgtgtacaagggcctcatcaacatgtaaactcttgtttgattgatgaaagttaggtcatagttgctatagttcttatatgtctactttttatatta |
19935844 |
T |
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| Q |
201 |
ga |
202 |
Q |
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|| |
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| T |
19935845 |
ga |
19935846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 19966784 - 19966985
Alignment:
| Q |
1 |
aaaatatattatgcagaatgcgaaagtactgaacaccatttcaattaagagtgtctctcacatagatttaaatgtcaagtaccaaatgatatcgaaatta |
100 |
Q |
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| T |
19966784 |
aaaatatattatgcagaattcagaagtattgaagaccatgtcaatcaagagcgcctcttccatagatacaaataccaagcaccaaatttggatgaaactt |
19966883 |
T |
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| Q |
101 |
gcttcgtcagcaagggcctcaacaacatgtgaagtcttatttgattgatgaaaattagggcatagttgcaatagttcttatatgtctgctttttatatta |
200 |
Q |
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| T |
19966884 |
gcttcgtgtacaagggcctcatcaacatgtaaactcttgtttgattgatgaaagttaggtcatagttgctatagttcttatatgtctactttttatatta |
19966983 |
T |
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| Q |
201 |
ga |
202 |
Q |
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|| |
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| T |
19966984 |
ga |
19966985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 19929368 - 19929670
Alignment:
| Q |
1 |
aaaatatattatgcagaatgcgaaagtactgaacaccatttcaattaagagtgtctctcacatagatttaaatgtcaagtaccaaatgatatcgaaatta |
100 |
Q |
| |
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||||||||||||||||||| | |||||| |||| ||||| ||||| |||||| |||| | ||||| ||||| |||| ||||||| | |||| || |
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| T |
19929368 |
aaaatatattatgcagaattcaaaagtattgaagaccatgtcaatcaagagtacctcttccgtagatacaaatgccaagcaccaaattttgaagaaacta |
19929467 |
T |
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| Q |
101 |
gcttcgtcagcaagggcctcaacaacatgtgaagtcttatttgattgatgaaaattagggcatag-ttgcaatagttcttatatgtctgctttttatatt |
199 |
Q |
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||||||| ||||||||||| |||||||| || ||||||||||||||||||| ||| | ||||| || |||||||||| ||||||| ||||||| ||| |
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| T |
19929468 |
gcttcgtgcacaagggcctcatcaacatgtaaactcttatttgattgatgaaagttatgtcatagtttacaatagttct--tatgtctactttttaaatt |
19929565 |
T |
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| Q |
200 |
agagtctaacgtatccaatgctaagatttaatggttttcaaaggctaaacctc--tttcattttga-ctctgt--catttagattttcagatatgtattg |
294 |
Q |
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||| ||| ||||| ||||| |||||| | || | |||||||||| ||||| ||||||||||| |||| | |||||| ||||||| |||||||||| |
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| T |
19929566 |
agattct-tcgtatgcaatggtaagatctgat-gctttcaaaggcatgacctctgtttcattttgacctctataacatttaaattttcaaatatgtattg |
19929663 |
T |
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| Q |
295 |
gctttca |
301 |
Q |
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|||||| |
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| T |
19929664 |
actttca |
19929670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17167339 - 17167287
Alignment:
| Q |
1 |
aaaatatattatgcagaatgcgaaagtactgaacaccatttcaattaagagtg |
53 |
Q |
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| T |
17167339 |
aaaatatattatgcagaatgcgaaagtactaaacaccatttcaattaagagtg |
17167287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 4287974 - 4287853
Alignment:
| Q |
77 |
aagtaccaaatgatatcgaaattagcttcgtcagcaagggcctcaacaacatgtgaagtcttatttgattgatgaaaattagggc--atagttgcaatag |
174 |
Q |
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| T |
4287974 |
aagtatcaaatgttattgaagttagcttcgttgccaagggcctcaacaacatgcaaattcgtgtttgattgacgacaattagggcatatagttgcaatag |
4287875 |
T |
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| Q |
175 |
ttcttatatgtctgctttttat |
196 |
Q |
| |
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||||||||||||| |||||||| |
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| T |
4287874 |
ttcttatatgtctactttttat |
4287853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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