View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_142 (Length: 345)

Name: NF11737A_low_142
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_142
NF11737A_low_142
[»] chr2 (8 HSPs)
chr2 (14-320)||(2466645-2466930)
chr2 (67-320)||(2462597-2462832)
chr2 (194-320)||(3063274-3063400)
chr2 (184-318)||(2458023-2458154)
chr2 (187-318)||(2469972-2470100)
chr2 (190-320)||(2474241-2474368)
chr2 (221-297)||(2471017-2471090)
chr2 (259-320)||(2486515-2486576)
[»] chr4 (1 HSPs)
chr4 (194-320)||(18015920-18016046)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 2466930 - 2466645
Alignment:
Q  14 acattattttattatactccaataatacgagaaatgtcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccat 113  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466930 acattattttattatactccaataatatgagaaatatcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccat 2466831  T
Q  114 ttatttatttatttatccatcatatggtatggtttctatatatagcttaaattgaaacattctattaagcatgcacttagtatggcttttcaccaacata 213  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||                |||||||||||||||||||||||   |    
T  2466830 ttatttatttatttatccatcatatggtatggtttcta--tatagcttaaagtgaaa----------------cacttagtatggcttttcaccaa---a 2466752  T
Q  214 gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466751 gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacc 2466652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 67 - 320
Target Start/End: Complemental strand, 2462832 - 2462597
Alignment:
Q  67 atataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttatttatttatccatcatatggtatggtttctatatatagcttaaatt 166  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||| |    
T  2462832 atataatgagtcaagaactcattacgtacatacgtttaccctgcaatttatttatttatttatccatcatatggtatggtttctatata--gcttaaagt 2462735  T
Q  167 gaaacattctattaagcatgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac 266  Q
    ||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2462734 gaaaca----------------cttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac 2462651  T
Q  267 atctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2462650 atctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtat 2462597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 194 - 320
Target Start/End: Original strand, 3063274 - 3063400
Alignment:
Q  194 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3063274 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 3063373  T
Q  294 gtgagtttctccaaacaacctgagtat 320  Q
    |||||||||||||||||||||||||||    
T  3063374 gtgagtttctccaaacaacctgagtat 3063400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 2458154 - 2458023
Alignment:
Q  184 atgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacat 283  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||  |||||||||| |||| ||||||   |||||| ||||||||||||    
T  2458154 atgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacat 2458058  T
Q  284 ccaacacgttgtgagtttctccaaacaacctgagt 318  Q
    |||| ||| | || |||||||||||||||||||||    
T  2458057 ccaatacgctttgtgtttctccaaacaacctgagt 2458023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 318
Target Start/End: Complemental strand, 2470100 - 2469972
Alignment:
Q  187 cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca 286  Q
    ||||||||||||  |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||  |||||   |||| |||||||||||||||||    
T  2470100 cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttatt---acatttcactttggcacatcca 2470004  T
Q  287 acacgttgtgagtttctccaaacaacctgagt 318  Q
    |  ||||||| |||||||||||| ||||||||    
T  2470003 atccgttgtgtgtttctccaaaccacctgagt 2469972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 2474368 - 2474241
Alignment:
Q  190 ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca 289  Q
    |||||||||  |||| |||| ||||||||| || |||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| |    
T  2474368 ttagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaata 2474272  T
Q  290 cgttgtgagtttctccaaacaacctgagtat 320  Q
    |||| || |||||||||||| ||||||||||    
T  2474271 cgttttgtgtttctccaaaccacctgagtat 2474241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 2471090 - 2471017
Alignment:
Q  221 ggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtga 297  Q
    |||||||| |||||||| ||||||||||| |||| |||||   |||||||||||||| |||||||||||||||||||    
T  2471090 ggtgggtcataattgcaagtaatgaatgtgcctccattat---cacatctcactttgccacatccaacacgttgtga 2471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 2486576 - 2486515
Alignment:
Q  259 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtat 320  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||||||||||||||    
T  2486576 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtat 2486515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 18016046 - 18015920
Alignment:
Q  194 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18016046 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 18015947  T
Q  294 gtgagtttctccaaacaacctgagtat 320  Q
    |||||||||||||||||||||||||||    
T  18015946 gtgagtttctccaaacaacctgagtat 18015920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University