View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_143 (Length: 341)
Name: NF11737A_low_143
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_143 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 34314710 - 34314390
Alignment:
| Q |
1 |
agagaagaataaagaagataaagaatgagactgcaattccaataaaatacaaagtcttgaataataatgacaacttgatacaagagagtagtatatat-- |
98 |
Q |
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| T |
34314710 |
agagaagaataaagaagataaagaatgagactgcaattccaataaaatacaaagtcttgaataataatgacaacttgatacaagagagtagtatatatat |
34314611 |
T |
|
| Q |
99 |
tattaatttctannnnnnnnnnnaagaaatcaaaacggaatatattaaaaacaaagagactatttccttaacataaagtatgtaagagaaaatagcagaa |
198 |
Q |
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| T |
34314610 |
tattaattcctattttttttt--acgaaatcaaaatgaaatatattaagaactaagagtctattcccttagcataaaatatgtaagagaagatagtcgaa |
34314513 |
T |
|
| Q |
199 |
aagttacaatagagattcagacagaatgatcacaaattaactgattctcaaacatatttacaatatcaaccatcgtgaactctcacaaacaaattgttca |
298 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34314512 |
aagttacgatagagattcatacagaatgatcacaaattagctgattccgaaacatatttataatatcaaccatcgtgaactctcacaaacaaattgttcg |
34314413 |
T |
|
| Q |
299 |
cttgatataatactcctcttttg |
321 |
Q |
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|||||||||| |||||||||||| |
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| T |
34314412 |
cttgatataacactcctcttttg |
34314390 |
T |
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