View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_144 (Length: 341)
Name: NF11737A_low_144
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_144 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 2163290 - 2162955
Alignment:
| Q |
4 |
atcagggaccagatacagattgcatgccatatattgagtgcaaggcaaatctacaacggaatactataggaaaagacccaagatacactatcgaaagtta |
103 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
2163290 |
atcagggaccagacacagattgcatgtcatatattgagtgcaaggcaaatctacaacggaatacaataggaaaagacccaagatacactatagaaagtta |
2163191 |
T |
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| Q |
104 |
taaaagaccagttaatagttaaaaagtgacatcaaaatctaacaccactttttataaagaaataacctaaattcttttcagaacagccactccgctactg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2163190 |
--aaagaccagttaatagttaaaaagtgacatcaaaatctaacaccgctttttataaagaaataacctaaattcttttcagaacagccactccactactg |
2163093 |
T |
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| Q |
204 |
actctgtcctcacaaataaaatatatgatttaactggggctatgtgttttactctcaaattcacagtaaaaaagaaaacactgatacaccggtaattcaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2163092 |
actctgtcctcacaaataaaatatatgatttaactggggctatgtgttttactctcacattcacagtaaaaaagaaaacactgatacaccggtaattcaa |
2162993 |
T |
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| Q |
304 |
tcccaaagttctagagtcaaaggaaaagaactacctga |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2162992 |
tcccaaagttctagagtcaaaggaaaagaactacctga |
2162955 |
T |
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