View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_145 (Length: 340)

Name: NF11737A_low_145
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_145
NF11737A_low_145
[»] chr8 (1 HSPs)
chr8 (68-324)||(24859179-24859435)
[»] chr4 (2 HSPs)
chr4 (50-216)||(26901741-26901907)
chr4 (50-214)||(26897281-26897445)
[»] chr5 (2 HSPs)
chr5 (50-214)||(27205694-27205859)
chr5 (50-216)||(27210157-27210324)
[»] chr3 (4 HSPs)
chr3 (50-216)||(24047105-24047272)
chr3 (50-216)||(23674829-23674996)
chr3 (50-214)||(23679334-23679499)
chr3 (50-214)||(24051571-24051736)
[»] chr1 (2 HSPs)
chr1 (50-216)||(26406715-26406882)
chr1 (50-216)||(26411181-26411348)
[»] chr6 (2 HSPs)
chr6 (215-324)||(20482535-20482644)
chr6 (1-45)||(20486853-20486897)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 68 - 324
Target Start/End: Original strand, 24859179 - 24859435
Alignment:
Q  68 agaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcc 167  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24859179 agaaagcagtatgcggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcc 24859278  T
Q  168 tgcaacagtataatttataacataccacctctagaataccaccaacagattcaattccatatatgatattcagttcaatgtgaaacaaaactaacacaaa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  24859279 tgcaacagtataatttataacataccacctctagaataccaccaacagattcaattccatatatggtatacagttcaatgtgaaacaaaactaacacaaa 24859378  T
Q  268 attaacagaattaatacattgattcaaaggatggtatttcattgattcaaatgatgt 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24859379 attaacagaattaatacattgattcaaaggatggtatttcattgattcaaatgatgt 24859435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 26901907 - 26901741
Alignment:
Q  50 tttgtaatgctaagttgaagaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca 149  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26901907 tttgtaatgctaagttgaagtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca 26901808  T
Q  150 cgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26901807 cgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 26901741  T

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Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 26897445 - 26897281
Alignment:
Q  50 tttgtaatgctaagttgaagaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca 149  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26897445 tttgtaatgctaagttgaagtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca 26897346  T
Q  150 cgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26897345 cgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca 26897281  T

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Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 27205859 - 27205694
Alignment:
Q  50 tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 148  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27205859 tttgtaatgctaagttgaacgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 27205760  T
Q  149 acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27205759 acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccatcaaca 27205694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 27210324 - 27210157
Alignment:
Q  50 tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 148  Q
    ||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27210324 tttgtaatgctaagttgaacgtaagtagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 27210225  T
Q  149 acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27210224 acgtttccactcaaaatcctgcaatagtataatttataacataccacctctagaataccaccaacaga 27210157  T

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Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 24047105 - 24047272
Alignment:
Q  50 tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 148  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24047105 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 24047204  T
Q  149 acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 216  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24047205 acgtttccgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 24047272  T

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Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 23674829 - 23674996
Alignment:
Q  50 tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 148  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23674829 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 23674928  T
Q  149 acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 216  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23674929 acgttttcgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 23674996  T

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Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 23679334 - 23679499
Alignment:
Q  50 tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 148  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23679334 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 23679433  T
Q  149 acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca 214  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23679434 acgttttcgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaaca 23679499  T

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Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 24051571 - 24051736
Alignment:
Q  50 tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 148  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24051571 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 24051670  T
Q  149 acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca 214  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24051671 acgttttcgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaaca 24051736  T

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Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 26406715 - 26406882
Alignment:
Q  50 tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 148  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26406715 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 26406814  T
Q  149 acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 216  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406815 acgtttccgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 26406882  T

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Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 26411181 - 26411348
Alignment:
Q  50 tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 148  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26411181 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 26411280  T
Q  149 acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 216  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26411281 acgtttccgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacaga 26411348  T

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Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 20482644 - 20482535
Alignment:
Q  215 gattcaattccatatatgatattcagttcaatgtgaaacaaaactaacacaaaattaacagaattaatacattgattcaaaggatggtatttcattgatt 314  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  20482644 gattcaattccatatctggtattcagttcaatgtgaaacaaaactaacacaaaattaatagaattaatacattgattcaaaggatgatatttcattgatt 20482545  T
Q  315 caaatgatgt 324  Q
    ||||||||||    
T  20482544 caaatgatgt 20482535  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20486897 - 20486853
Alignment:
Q  1 tcaggtttgttgttcttcttattcttgtaggccattgctttgtca 45  Q
    ||||||||||||||||| ||||| || ||||||||||||| ||||    
T  20486897 tcaggtttgttgttcttattattattttaggccattgcttcgtca 20486853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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