View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_147 (Length: 339)
Name: NF11737A_low_147
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_147 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 28825221 - 28824963
Alignment:
| Q |
19 |
atcatctttcttggattggaaatttaagtgtctccattttctttctttttcaatcattcttaggtttatgagttatagattttcaaatttgccttatcat |
118 |
Q |
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| T |
28825221 |
atcatctttcttggattggaaatttaagtgtctccattttctttctttttcaatcattcttaggtttatgagttataggttttcaaatttgccttatcat |
28825122 |
T |
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| Q |
119 |
aatatcacacaaaatttcacatatttccatcaaagaataagtccattaaatcattttatcaaacatgaaattgaaagaaactcaaagaaatgaccaggtg |
218 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28825121 |
aatatcacacaaaattccacatctttccatcaaagaataagtccattaaatcattttatcaaacatgaaattgaaagaaactcaaagaaatgtccaggtg |
28825022 |
T |
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| Q |
219 |
cctaatattgttgttcatcatacttacaataatatgtatttttaagtgcctaatcaatc |
277 |
Q |
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| T |
28825021 |
cctaatattgttgttcatcatacttacaataatatgtatttttaagtgcctaatcaatc |
28824963 |
T |
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