View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_154 (Length: 336)
Name: NF11737A_low_154
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_154 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 2 - 336
Target Start/End: Original strand, 19661345 - 19661680
Alignment:
| Q |
2 |
ccgcattaacaagtacatctgaatgaaaacaagcgtcaataatactgttattttgtttttcatcacttttcatctattctttatttaagtcgtccaccaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
19661345 |
ccgcattaacaagtacatctgaatgaaaacaagcgtcaataatattgttattttgttgttcatcacttttcatccgttctttatttaagtcgtccaccaa |
19661444 |
T |
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| Q |
102 |
atcatcaatctctccttgtacctcctccattccgggagcgtcgttatgagttgataatgcttccgtcctggattctttttcttcctccgtcataaaagca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19661445 |
atcatcaatctctccttgtacctcctccattccgggagcgtcgttatgagttgataacgcttctgtcctggattctttttcttcctccgtcataaaagca |
19661544 |
T |
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| Q |
202 |
tcctgccctaaattgcacccccactcctcaaccaacttaatcatatg-ttacacccatctataataacttcagacgacgaattgataacatccaacatag |
300 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19661545 |
tcctcccctaaattgcacccccactcctaaaccaacttaatcatatgtttacacccatctataataacttcagacgacgaattgataacatccaacatag |
19661644 |
T |
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| Q |
301 |
aagttgatatccaaaccctagcataatccaatctcg |
336 |
Q |
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| T |
19661645 |
aagttgatatcagaaccctagcataatccaatctcg |
19661680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 42355 - 42438
Alignment:
| Q |
161 |
cttccgtcctggattctttttcttcctccgtcataaaagcatcctgccctaaattgcacccccactcctcaaccaacttaatca |
244 |
Q |
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| T |
42355 |
cttccgtcctggactccattttttcctccgtcaaaaaatcatcttcccctaaattgcacccccattcctccaccaactttatca |
42438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 21110702 - 21110759
Alignment:
| Q |
184 |
tcctccgtcataaaagcatcctgccctaaattgcacccccactcctcaaccaacttaa |
241 |
Q |
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| T |
21110702 |
tcctccgtcatgaaagcatcctcccccaaattacaaccccactcctccaccaacttaa |
21110759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 13059759 - 13059703
Alignment:
| Q |
185 |
cctccgtcataaaagcatcctgccctaaattgcacccccactcctcaaccaacttaa |
241 |
Q |
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| T |
13059759 |
cctccgtcataaacacatcctcccccaaattgcacccccattcctccaccaatttaa |
13059703 |
T |
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