View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_157 (Length: 335)
Name: NF11737A_low_157
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_157 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 53467256 - 53466926
Alignment:
| Q |
4 |
atgagatggacatcacattttcattcaaaatcataaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttgaactt |
103 |
Q |
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| T |
53467256 |
atgagttggacaccacattttcattcaaaatcttaaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttggactt |
53467157 |
T |
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| Q |
104 |
ctacctcacacttgctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgcccccctcaaatggatgctttttatatatac |
203 |
Q |
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| T |
53467156 |
ctacctcacacttgctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgc-cccctcaaattgatgctttttatatatac |
53467058 |
T |
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| Q |
204 |
ttgcaccaccatactcaacaggacatgttgtctcaccaccatgtcatgaagactttcaacataaggagcagatcgaaccctatacgttgaaccatcagct |
303 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53467057 |
ttgcaccaccatgctcaacaggacatgttgtctcaccaccatgtcatgaagactttcaacataaggagcagatcgaaccctatacgttgaaccatcagct |
53466958 |
T |
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| Q |
304 |
ctgctaccatggttttgataaagatcatgtga |
335 |
Q |
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| T |
53466957 |
ctgcgaccatggttttgataaagatcatgtga |
53466926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 45635976 - 45636047
Alignment:
| Q |
100 |
acttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtat |
171 |
Q |
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| T |
45635976 |
acttctatctcacacttggtacacaacaatctccctctcaagtgtgagtcatccatccattcatttgggtat |
45636047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 13154520 - 13154560
Alignment:
| Q |
100 |
acttctacctcacacttgctacacaacaatctccctctcaa |
140 |
Q |
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| T |
13154520 |
acttctaactcatacttgctacacaacaatcttcctctcaa |
13154560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 42730342 - 42730284
Alignment:
| Q |
93 |
atgttgaacttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcat |
151 |
Q |
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| T |
42730342 |
atgtggaacttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcat |
42730284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 130
Target Start/End: Complemental strand, 28483780 - 28483750
Alignment:
| Q |
100 |
acttctacctcacacttgctacacaacaatc |
130 |
Q |
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| T |
28483780 |
acttctacctcacacttgctacacaacaatc |
28483750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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