View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_159 (Length: 334)
Name: NF11737A_low_159
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_159 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 49330863 - 49330543
Alignment:
| Q |
1 |
aatatcaaatggaggaatagatacaaaacaacaaatcaacttattcattgatatcctcctagtcaacacatgtgatgtattgattcccttcttgcgaacg |
100 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
49330863 |
aatatcacatggaggaatagatacaaaacaacaattcaacttgttcattactatcct---agttaacacatgtgatgtattacttcccttcttgcgaacg |
49330767 |
T |
|
| Q |
101 |
gcatagtaacataaaccaaacattataattttcctttgtaatttttcgacattgttttgctaaattcttcaaataaaaaacagcgaaattgttcagttga |
200 |
Q |
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|||| ||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||||||| | || ||||||||||||||||||||||| |||| |
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| T |
49330766 |
acatactaacataaacctaagattataattttcctttgtaacttttccacactgttttgctaaattttacatataaaaaacagcgaaattgttcaattga |
49330667 |
T |
|
| Q |
201 |
gttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgcgtatgattcc |
300 |
Q |
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|||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||| | || |
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| T |
49330666 |
gttgcttatatttcagtttcaccatccaatttgattctcaagtctgtgctacctaccgattcggaaaaaatgtagagcatcacgatttgcttctg----t |
49330571 |
T |
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| Q |
301 |
gctatttcagcttcatcaatttcataga |
328 |
Q |
| |
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|| |||| |||||||||||||||||||| |
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| T |
49330570 |
gccattttagcttcatcaatttcataga |
49330543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 4660393 - 4660526
Alignment:
| Q |
194 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgcgta |
293 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4660393 |
cagttgagttgcttatattacaacttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
4660492 |
T |
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| Q |
294 |
tgattccgctatttcagcttcatcaatttcatag |
327 |
Q |
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| T |
4660493 |
tgattccgctattttagcttcatcaatttcatag |
4660526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 194 - 324
Target Start/End: Original strand, 20558 - 20688
Alignment:
| Q |
194 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgcgta |
293 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||| |||||||||| || |||| |||||| ||||||||||||||||||| |||||||| || |
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| T |
20558 |
cagtggagttgcttatattacaacttccccatccaatttgataatcaagtctgggccacctcctgatttgggaaaaatgtagagcatcccgatttgctta |
20657 |
T |
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| Q |
294 |
tgattccgctatttcagcttcatcaatttca |
324 |
Q |
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|||||||||||||| ||||| ||||| |||| |
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| T |
20658 |
tgattccgctattttagctttatcaaattca |
20688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 7691 - 7771
Alignment:
| Q |
194 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgta |
274 |
Q |
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|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
7691 |
cagttgagttgcttatattacaacttccccctccgatttgattatcaagtctgtgctacctcctgattcaggaaaaatgta |
7771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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