View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_160 (Length: 334)
Name: NF11737A_low_160
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_160 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 10142087 - 10141752
Alignment:
| Q |
1 |
tcattgaagcactgcgtaaagaaatcggccagactgtgatggtcaatgtgaagaaggtaccagccaacaccaaagcaccagaaacgtctcgaggatgggc |
100 |
Q |
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| T |
10142087 |
tcattgaagcactgcgtaaagaaatcggccagactgtgatggtcaatgtgaagaaggtaccagccaacaccaaagcaccagaaacgtctcgaggatgggc |
10141988 |
T |
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| Q |
101 |
tagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaattaaaagggttaagaatcatgcacctgattctgattctggttgcttgtgat |
200 |
Q |
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| T |
10141987 |
tagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaattaaaagggttaagaatcatgcacctgattctgattctggttgcttgtgat |
10141888 |
T |
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| Q |
201 |
ttgtaaatgaaacaaaacaaatgtatgaataagaataaag--ttgtgtcaaacttggacagtacttgaactttgtccttttgttttaaaccaaacaatgc |
298 |
Q |
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| T |
10141887 |
ttgtaaatgacacaaaacaaatgtatgaataagaataaagctgtgtgtcaaacttggacagtacttgaactttgtccttttgttttaaaccaaacaatgc |
10141788 |
T |
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| Q |
299 |
ttgtaagatgttacttgtattccatcttccctatca |
334 |
Q |
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| T |
10141787 |
ttgtaagatgttacttgtattccatcttccctatca |
10141752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 10135288 - 10135316
Alignment:
| Q |
242 |
tgtgtcaaacttggacagtacttgaactt |
270 |
Q |
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| T |
10135288 |
tgtgtcaaacttggacagtacttgaactt |
10135316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 40685042 - 40685101
Alignment:
| Q |
90 |
cgaggatgggctagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaa |
149 |
Q |
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| T |
40685042 |
cgaggatgggctaaaactagcttcttctttggtaacttgttggaaaggttcttggcttaa |
40685101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 40684961 - 40685017
Alignment:
| Q |
6 |
gaagcactgcgtaaagaaatcggccagactgtgatggtcaatgtgaagaaggtacca |
62 |
Q |
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| T |
40684961 |
gaagcacttcgtaaagaaatcggcaagacaatgatggtagatgtgaagaaagtacca |
40685017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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