View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_165 (Length: 329)
Name: NF11737A_low_165
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_165 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 2163583 - 2163264
Alignment:
| Q |
10 |
acatcaaggaaagatcaatgggaatattgggcaaataaagatgaaccttatagttttgttactgtcattgcttttgctgaagcatttcagatatttcaca |
109 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
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| T |
2163583 |
acatcaagaaaagatcaatggcaatattgggcaaataaagatgaaccttatagttttgttactgtcaaggattttgccgaagcatttcagatatttcaca |
2163484 |
T |
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| Q |
110 |
taggtcaaaaacttggagatgagctagccaatccttttgacaagtcaaaatgccatgcaagtgtcttgaccacaaagaaatacggtgttaacaaaaagga |
209 |
Q |
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| T |
2163483 |
taggtcaaaaacttggagatgagctagccaatccttttgacaagtcgaaatgccatgcaagtgtcttgaccacaaagaaatacggtgttaacaagaagga |
2163384 |
T |
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| Q |
210 |
gcttctgaaggcttgtgctagccgagaatttttgcttatgaagcgaaattcgtttgtccacattttcaaagtcactcaagtgagcaacattcaaacacta |
309 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2163383 |
gcttctgaaggcttgtgctagcagagaatttttgcttatgaagcgaaattcgtttgtccacattttcaaagtcactcaagtgagcaacattcaaacacta |
2163284 |
T |
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| Q |
310 |
atattgctcatatattttgc |
329 |
Q |
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| T |
2163283 |
atattgctcatatattttgc |
2163264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 2151306 - 2151022
Alignment:
| Q |
9 |
gacatcaaggaaagatcaatgggaatattgggcaaataaagatgaaccttatagttttgttactgtcattgcttttgctgaagcatttcagatatttcac |
108 |
Q |
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||||||||| |||||||||||| |||||||||| | ||||||||||||||| ||||| ||||||| | ||||||| ||| || | |||||||| |
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| T |
2151306 |
gacatcaagaaaagatcaatggcaatattgggctcgtgaagatgaaccttataactttgtcactgtcaaggattttgctcgagccttcgaattatttcac |
2151207 |
T |
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| Q |
109 |
ataggtcaaaaacttggagatgagctagccaatccttttgacaagtcaaaatgccatgcaagtgtcttgaccacaaagaaatacggtgttaacaaaaagg |
208 |
Q |
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| T |
2151206 |
ataggcaaacaacttggagaagagctggccgatccatttgacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaagg |
2151107 |
T |
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| Q |
209 |
agcttctgaaggcttgtgctagccgagaatttttgcttatgaagcgaaattcgtttgtccacattttcaaagtcactcaagtgag |
293 |
Q |
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| T |
2151106 |
agctgctaagggcttgtgctagcagagagttattgcttatgaagagaaattcttttgtctacatattcaaagccacacaagtgag |
2151022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 4302384 - 4302605
Alignment:
| Q |
32 |
aatattgggcaaataaagatgaaccttatagttttgttactgtcattgcttttgctgaagcatttcagatatttcacataggtcaaaaacttggagatga |
131 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||| || | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
4302384 |
aatattgggcaaataaagatgaaccttattgttttcttactgttatggattttgcagaagcgtttcagatatttcacatagatcaaaaacttggagatga |
4302483 |
T |
|
| Q |
132 |
gctagccaatccttttgacaagtcaaaatgccatgcaagtgtcttgaccacaaagaaatacggtgttaacaaaaaggagcttctgaaggcttgtgctagc |
231 |
Q |
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|||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
4302484 |
gctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatggtgttaacaagaatgagcttctgaaggcttgtgctagt |
4302583 |
T |
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| Q |
232 |
cgagaatttttgcttatgaagc |
253 |
Q |
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| T |
4302584 |
atagaatttttgcttatgaagc |
4302605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 8537250 - 8537199
Alignment:
| Q |
222 |
ttgtgctagccgagaatttttgcttatgaagcgaaattcgtttgtccacatt |
273 |
Q |
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||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8537250 |
ttgtgttagcagagaatttttgcttacgaagcgaaattcgtttgtccacatt |
8537199 |
T |
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