View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_168 (Length: 325)
Name: NF11737A_low_168
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_168 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 48833706 - 48833999
Alignment:
| Q |
12 |
tggacatcatattttagagagactaacatatattatatatttatctatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctg |
111 |
Q |
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| T |
48833706 |
tggacatcatattttagagagactaacatatattatatatttatttatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctg |
48833805 |
T |
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| Q |
112 |
gtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccatacca |
211 |
Q |
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| T |
48833806 |
gtgttataatatcattggcatcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccatacca |
48833905 |
T |
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| Q |
212 |
agatccatctgatgaattttactttaagactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttgatacctaatcgtgat |
305 |
Q |
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| T |
48833906 |
agatccatctgatgaattttactttaagactttctttgatgctggagagtttgaatttggtttgtcaacggtgtctttgatacctaatcctgat |
48833999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 69 - 305
Target Start/End: Complemental strand, 48790434 - 48790198
Alignment:
| Q |
69 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
168 |
Q |
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| T |
48790434 |
tgggccaattggaagtttcatataggatttgatgtacgagctggtattgtaatatcccttgcatctatttatgatctagagaagcacatatatcgtagag |
48790335 |
T |
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| Q |
169 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
268 |
Q |
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| T |
48790334 |
tattatacaaagggtacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatt |
48790235 |
T |
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| Q |
269 |
tggtttgtcaacggtgtctttgatacctaatcgtgat |
305 |
Q |
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| T |
48790234 |
tggtctatcgactgtgtctttgatacccaaccgtgat |
48790198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 69 - 304
Target Start/End: Complemental strand, 15825965 - 15825730
Alignment:
| Q |
69 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
168 |
Q |
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| T |
15825965 |
tgggccaactggaagtttcatataggatttgatgtacgagctggtattataatatcacttgcatctatttacgaccttgaaaaacacaaatctcgtagag |
15825866 |
T |
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| Q |
169 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
268 |
Q |
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| T |
15825865 |
tattatacaaagggtatatttctgagttgtttgtgccataccaagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatt |
15825766 |
T |
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| Q |
269 |
tggtttgtcaacggtgtctttgatacctaatcgtga |
304 |
Q |
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| T |
15825765 |
tggtcgatctactgtttctttgatacctaatcgtga |
15825730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 66 - 305
Target Start/End: Complemental strand, 48816738 - 48816499
Alignment:
| Q |
66 |
agctgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgta |
165 |
Q |
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| T |
48816738 |
agctgggccaactggaagtttcatataggatttgatgtacgagctggtatagtgatatcacttgcatctatttacgatctagagaaacataagtctcgcc |
48816639 |
T |
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| Q |
166 |
gagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttgg |
265 |
Q |
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| T |
48816638 |
gtgtactctacaaaggctacatttccgagctatttgtgccttatcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttgg |
48816539 |
T |
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| Q |
266 |
atttggtttgtcaacggtgtctttgatacctaatcgtgat |
305 |
Q |
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| T |
48816538 |
atttggtctgtcaacggtgtctttgatacctaatcgtgat |
48816499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 305
Target Start/End: Complemental strand, 48808106 - 48807940
Alignment:
| Q |
138 |
tacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttacttta |
237 |
Q |
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| T |
48808106 |
tacgatatagagaaacacaagtttcgtcgtgtactctacaaagc-tacatttccgagctatttgtgccttatcaagacccaaccgaagaattttacttta |
48808008 |
T |
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| Q |
238 |
agactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttgatacctaatcgtgat |
305 |
Q |
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| T |
48808007 |
agactttctttgattctggagagtttggatttgccctgtcaacggtgtctttgatacctaatcgtgat |
48807940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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