View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_17 (Length: 522)
Name: NF11737A_low_17
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_17 |
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| [»] chr1 (4 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 17 - 522
Target Start/End: Original strand, 44682876 - 44683381
Alignment:
| Q |
17 |
acatcacataaattttagctaatgtgataagttgtgtgcatcaaacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44682876 |
acatcacataaattttagctaatgtgataagttgtgtgcatcaaacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgtt |
44682975 |
T |
|
| Q |
117 |
catcttttgaccaaatggatcgtttttcaataaattcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44682976 |
catcttttgaccaaatggatcgtttttcaataaattcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatatt |
44683075 |
T |
|
| Q |
217 |
cccactgcatgccaaattccagctacgattgaagtcatcatcgaggggcctctcaaatacaactatgttgctgaactcgtttaacatagcaccaattcca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44683076 |
cccactgcatgccaaattccagctacgattgaagtcatcatcgaggggcctctcaaatacaactatgttgctgaactcgtttaacatagcaccaattcca |
44683175 |
T |
|
| Q |
317 |
gcatcacgtagtagatttagtaaataatttgctttcattatacattcatgcacctcattttcaagtcctattaaaccccnnnnnnngagagcataccaaa |
416 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44683176 |
gcatcacgtagtagatttagtaaataatgtgctttcattatacattcatgcacctcattttcaagtcctattaaacccctttttttgagagcataccaaa |
44683275 |
T |
|
| Q |
417 |
ggaagatgggagcatgcccacaacggctacctgtgattgtggcatcccttgaagcaatgatgccaacatctctagatattgcattcatgtatttcaaacg |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
44683276 |
ggaagatgggagcatgcccacaacggctacctgtgattgtggcatcccttgaagcaatgatgccaacatctctagatatcgcactcatgtatttcaaacg |
44683375 |
T |
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| Q |
517 |
agttat |
522 |
Q |
| |
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|||||| |
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| T |
44683376 |
agttat |
44683381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 60 - 522
Target Start/End: Original strand, 44659774 - 44660236
Alignment:
| Q |
60 |
aacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgttcatcttttgaccaaatggatcgtttttcaataaattcatgaac |
159 |
Q |
| |
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|||||||||||||| | |||||||| || || ||||||||| |||||| ||||||||||||||| ||||||||||| |||||||| |||||||| | || |
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| T |
44659774 |
aacaagcacaatttctagaaccaacgtcgttcgcaatgcatggaggctgaaattgttcatctttataccaaatggattgtttttcagtaaattcacggac |
44659873 |
T |
|
| Q |
160 |
aaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatattcccactgcatgccaaattccagctacgattgaagtcatcatcg |
259 |
Q |
| |
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||| | ||| | ||||||||||| ||| || | |||||||||||||||||| |||| ||| |||||||||||| |||||| | |||| |||||| |
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| T |
44659874 |
aaatgagtcgagcatttcaacagtaacgtgcttcaacactaccacatgtgcagtatttttgttgcttgccaaattccatctacgagtaaagtgatcatcc |
44659973 |
T |
|
| Q |
260 |
aggggcctctcaaatacaactatgttgctgaactcgtttaacatagcaccaattccagcatcacgtagtagatttagtaaataatttgctttcattatac |
359 |
Q |
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||||| |||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44659974 |
aggggtctctcaaacacaactatgttgctaaatttgtttaacatagcaccaattccagcatcacgtagtagatttagtaaataatgtgctttcattatac |
44660073 |
T |
|
| Q |
360 |
attcatgcacctcattttcaagtcctattaaaccccnnnnnnngagagcataccaaaggaagatgggagcatgcccacaacggctacctgtgattgtggc |
459 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44660074 |
attcatgcacctcattttcaagtcctattaaacccctttttttgagagcataccaaaggaagatgggagcatgcccacaacggctacctgtgattgtggc |
44660173 |
T |
|
| Q |
460 |
atcccttgaagcaatgatgccaacatctctagatattgcattcatgtatttcaaacgagttat |
522 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44660174 |
atcccttgaagcaatgatgtcaacatctctagatagtgcattcatgtatttcaaacgagttat |
44660236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 126 - 324
Target Start/End: Original strand, 44640000 - 44640198
Alignment:
| Q |
126 |
accaaatggatcgtttttcaataaattcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatattcccactgca |
225 |
Q |
| |
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||||||| | |||||||| | |||| |||| |||||| | |||||||||||||| || ||||||||| | ||| ||||||||||||||||| || | |
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| T |
44640000 |
accaaattgctcgttttttagtaaactcatcaacaaatgagtccaacatttcaatagtaacatgttgcatcaccaccacatgtgcaatatttccttgata |
44640099 |
T |
|
| Q |
226 |
tgccaaattccagctacgattgaagtcatcatcgaggggcctctcaaatacaactatgttgctgaactcgtttaacatagcaccaattccagcatcacg |
324 |
Q |
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||| ||| |||| | ||| | || ||| ||| | ||| ||||||| |||||| ||||||| || || |||||||| | |||||||||||||||||| |
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| T |
44640100 |
tgctaaactccactttcgaataaactcaatatccaaaggcttctcaaaaacaactgtgttgctaaattcatttaacattgtaccaattccagcatcacg |
44640198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 44668333 - 44668402
Alignment:
| Q |
146 |
ataaattcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatat |
215 |
Q |
| |
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||||| |||| |||||||| ||||||||||||||||| ||| || || | ||| |||||||||||||||| |
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| T |
44668333 |
ataaactcatcaacaaaggagtccaacatttcaacagtaacgtgctgcatcaccaccacatgtgcaatat |
44668402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 51 - 522
Target Start/End: Complemental strand, 29358045 - 29357574
Alignment:
| Q |
51 |
tgtgcatcaaacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgttcatcttttgaccaaatggatcgtttttcaataaa |
150 |
Q |
| |
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|||| ||| |||||||||||||| | |||||||| || ||||||| ||| || ||| ||||||| ||||||| |||||||| |||||||||| ||||| |
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| T |
29358045 |
tgtgtatcgaacaagcacaatttctagaaccaacgtcgcttgcaatacatggaagctgaaattgtccatctttagaccaaatcgatcgtttttggataaa |
29357946 |
T |
|
| Q |
151 |
ttcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatattcccactgcatgccaaattccagctacgattgaag |
250 |
Q |
| |
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|||| |||||||||||| | |||||||| || || || | ||||||||||||||||||||||| ||| ||| ||| |||||||| |||||| | ||| |
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| T |
29357945 |
ttcacaaacaaaggtgtcaagcatttcaatagtaatgtgcttcaacactaccacatgtgcaatatttccattgcttgctaaattccatctacgagtaaag |
29357846 |
T |
|
| Q |
251 |
tcatcatcgaggggcctctcaaatacaactatgttgctgaactcgtttaacatagcaccaattccagcatcacgtagtagatttagtaaataatttgctt |
350 |
Q |
| |
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| |||||| | ||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||| ||| | |
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| T |
29357845 |
tgatcatcaaagggtctctcaaaaacaactatgttgctaaactcgtttaacattgcaccaattccagcatcacgtagttgatttagtaagtaacgtgcat |
29357746 |
T |
|
| Q |
351 |
tcattatacattcatgcacctcattttcaagtcctattaaaccccnnnnnnngagagcataccaaaggaagatgggagcatgcccacaacggctacctgt |
450 |
Q |
| |
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|| |||| |||||||| || ||||| || |||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
29357745 |
tcgttatgcattcatgtacttcattctcgagtcctattaaacccctttttttgagagcataccaaagaaagattggagcatgcccactacggctacctgt |
29357646 |
T |
|
| Q |
451 |
gattgtggcatcccttgaagcaatgatgccaacatctctagatattgcattcatgtatttcaaacgagttat |
522 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||| |
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| T |
29357645 |
gattgtagcatcccttgaagcaatatattcaacatctctagatagtgcattgatatatttcaaacgagttat |
29357574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 60 - 522
Target Start/End: Complemental strand, 29342009 - 29341547
Alignment:
| Q |
60 |
aacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgttcatcttttgaccaaatggatcgtttttcaataaattcatgaac |
159 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||| ||| |||| | ||| ||| ||||||| |||||||| |||||||||| |||||||||||||| |
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| T |
29342009 |
aacaagcacaatttttagaaccaacgtcgcttgcaatacatggaggttgaaagtgtccatctttagaccaaatcgatcgtttttggataaattcatgaac |
29341910 |
T |
|
| Q |
160 |
aaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatattcccactgcatgccaaattccagctacgattgaagtcatcatcg |
259 |
Q |
| |
|
||||||||| | |||||||| || || || | ||||||||||||||||||||||| || ||| ||| |||||||| |||||| | |||| |||||| |
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| T |
29341909 |
aaaggtgtcaagcatttcaatagtaatgtgcttcaacactaccacatgtgcaatattttcattgcttgctaaattccatctacgagtaaagtgatcatca |
29341810 |
T |
|
| Q |
260 |
aggggcctctcaaatacaactatgttgctgaactcgtttaacatagcaccaattccagcatcacgtagtagatttagtaaataatttgctttcattatac |
359 |
Q |
| |
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| ||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||| ||| ||| |||| | |
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| T |
29341809 |
aagggtctctcaaaaacaactatgttgctaaactcgtttaacattgcaccaattccagcatcacgtagttgatttagtaagtaacgtgcattcgttatgc |
29341710 |
T |
|
| Q |
360 |
attcatgcacctcattttcaagtcctattaaaccccnnnnnnngagagcataccaaaggaagatgggagcatgcccacaacggctacctgtgattgtggc |
459 |
Q |
| |
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||||||| || ||||| || |||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||||||| || || |
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| T |
29341709 |
attcatgtacttcattctcgagtcctattaaacccctttttttgagagcataccaaagtaagattggagcatgcccactacggctacctgtgatggtagc |
29341610 |
T |
|
| Q |
460 |
atcccttgaagcaatgatgccaacatctctagatattgcattcatgtatttcaaacgagttat |
522 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||| |
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|
| T |
29341609 |
atcccttgaagcaatatattcaacatctctagatagtgcattgatatatttcaaacgagttat |
29341547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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