View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_170 (Length: 324)
Name: NF11737A_low_170
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_170 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 37 - 299
Target Start/End: Original strand, 9804675 - 9804937
Alignment:
| Q |
37 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
9804675 |
tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga |
9804774 |
T |
|
| Q |
137 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9804775 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt |
9804874 |
T |
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| Q |
237 |
tcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatat |
299 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9804875 |
tcatgaaagttcaacctcgtttcattatttgggcaagaaaggtaatccaaacttttttcatat |
9804937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 9817550 - 9817693
Alignment:
| Q |
9 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
108 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| ||||| |
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| T |
9817550 |
tgagatcgacatcaatcaaacaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacc |
9817649 |
T |
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| Q |
109 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaa |
152 |
Q |
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| T |
9817650 |
tctctcctaccaacattgctgagatcgacatcgatcagaaaaaa |
9817693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 9817438 - 9817577
Alignment:
| Q |
16 |
gacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcc |
115 |
Q |
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|||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| ||| | ||||||||||||||| |
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| T |
9817438 |
gacatcgatcaatcaaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcc |
9817537 |
T |
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| Q |
116 |
tagcaccatcactgagatcgacatcgatcagaaaaaagaa |
155 |
Q |
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| T |
9817538 |
taccaccataggtgagatcgacatcaatcaaacaaaagaa |
9817577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 9817777 - 9817857
Alignment:
| Q |
213 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttt |
293 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
9817777 |
tggttatctcttttgatggaattttcatgaaacttcaacctcgttccattatttgggcaaaaaaggtaatcaaaacttttt |
9817857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
| Q |
37 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
136 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||| |||||||||||||| || ||||||| ||| |||||| |
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| T |
9817341 |
tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga |
9817439 |
T |
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| Q |
137 |
catcgatca |
145 |
Q |
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||||||||| |
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| T |
9817440 |
catcgatca |
9817448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 11788 - 11866
Alignment:
| Q |
216 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaactttttt |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
11788 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattaattgggcataaaaggtaatcttaactttttt |
11866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 11558 - 11708
Alignment:
| Q |
9 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
108 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || ||||| ||| | |||||| |
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| T |
11558 |
tgagatcgacattgatcaaacaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacc |
11657 |
T |
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| Q |
109 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaagaaccat |
159 |
Q |
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|||||| || ||||||| |||||||| |||||||| |||||||||||||| |
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| T |
11658 |
tctctcataccaccatcgctgagatcaacatcgattggaaaaaagaaccat |
11708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 11467 - 11585
Alignment:
| Q |
37 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
136 |
Q |
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||||||||||||||||||| |||||| ||||| || | ||| | ||||||||||| || || ||||||||||||| ||| ||| | | |||||||||| |
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| T |
11467 |
tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga |
11566 |
T |
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| Q |
137 |
catcgatcagaaaaaagaa |
155 |
Q |
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||| ||||| | ||||||| |
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| T |
11567 |
cattgatcaaacaaaagaa |
11585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 42778900 - 42778818
Alignment:
| Q |
213 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttca |
296 |
Q |
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|||||||||||||||| |||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
42778900 |
tggttatctcttttgacggagttttcatgcaa-ttcaacctcgtttcatcaattgagcaaaaaaggtaatccaaacttttttca |
42778818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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