View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_173 (Length: 323)
Name: NF11737A_low_173
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_173 |
 | |
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| [»] chr4 (6 HSPs) |
| |
|
| [»] chr8 (5 HSPs) |
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|
| [»] chr3 (4 HSPs) |
| |
|
| [»] scaffold0159 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0380 (2 HSPs) |
| | |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 32 - 323
Target Start/End: Original strand, 49952974 - 49953266
Alignment:
| Q |
32 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
131 |
Q |
| |
|
|||||| ||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49952974 |
tgagattgacataacagttacatccaaaatcttatgacattataagtcatctcacttatatattgttcaatatctattatatgccattcaatgtgttatt |
49953073 |
T |
|
| Q |
132 |
ttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49953074 |
ttaatccacacttgacacattaacatctctcaattaaatatgagactcttcgtgtccgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
49953173 |
T |
|
| Q |
232 |
aagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcg-aacattgtagaaaaaacaaccacacaagtgagaat |
323 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49953174 |
aagcgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcgaaacattgcagaaaaaacaaccacacaagtgagaat |
49953266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 32 - 323
Target Start/End: Complemental strand, 39974981 - 39974689
Alignment:
| Q |
32 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
131 |
Q |
| |
|
|||||| ||||||| |||||||| || ||||||| || |||| |||||| |||| |||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39974981 |
tgagattgacatcacagttacattcaaaatcttaagagattatgagtcattccactgatatgttattcaatatctattatatggcattcaatatgttatt |
39974882 |
T |
|
| Q |
132 |
ttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
231 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||| | || |||||| ||||| | |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39974881 |
ttaacccacacttgacacattaccatctctcaattaaatacgatactctttgtgtccgcgatccaccaccacgaagcacttccactccccaaaaatgttg |
39974782 |
T |
|
| Q |
232 |
aagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaat |
323 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
39974781 |
aagcgtatatgatatcaccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaat |
39974689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 30 - 276
Target Start/End: Complemental strand, 282059 - 281813
Alignment:
| Q |
30 |
aatgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgtta |
129 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||| | ||||||| |||||||||||| |||| ||||||||||| |||||||||| ||||||||||||| |
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|
| T |
282059 |
aatgagattgacatcacagttacatccaaaatctcaagacattatgagtcatctcactaatatgttgttcaatatatattatatggaattcaatgtgtta |
281960 |
T |
|
| Q |
130 |
ttttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgt |
229 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
281959 |
ttttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacacagcacttccgctccacaaaaatgt |
281860 |
T |
|
| Q |
230 |
tgaagtgtatatgatatcaccgttgggacttacgggggagacaacac |
276 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
281859 |
tgaagcgtatatgatatcaccattgggacttacgggggagacaacac |
281813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 76 - 284
Target Start/End: Complemental strand, 13228783 - 13228578
Alignment:
| Q |
76 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
175 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
13228783 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagtatgag |
13228686 |
T |
|
| Q |
176 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
275 |
Q |
| |
|
||| || ||||||| |||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||| ||| ||||| |||||| ||||| |
|
|
| T |
13228685 |
actttttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattgaaactta-tggggagccaaca |
13228587 |
T |
|
| Q |
276 |
cttgtgtga |
284 |
Q |
| |
|
||||||||| |
|
|
| T |
13228586 |
cttgtgtga |
13228578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 42757638 - 42757706
Alignment:
| Q |
138 |
cacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcac |
210 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
42757638 |
cacaattgacacattaacatctctctattaa----gagactctccgtgtctgtgatccaccaccaagaagcac |
42757706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 50814725 - 50814674
Alignment:
| Q |
238 |
atatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga |
289 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||| ||||||||| |||| |
|
|
| T |
50814725 |
atatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcga |
50814674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 32 - 323
Target Start/End: Original strand, 21588784 - 21589076
Alignment:
| Q |
32 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
131 |
Q |
| |
|
|||||| ||||||| |||||||| || ||||||| || |||| |||||||||||| |||| || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
21588784 |
tgagattgacatcacagttacattcaaaatcttaagagattatgagtcatctcactgatatgttattcaatatctattatatgacattcaatgtgttatt |
21588883 |
T |
|
| Q |
132 |
ttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
231 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||||||| | || |||||||||||| |||||||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
21588884 |
ttaacccacccttgacacattaccatctctcaattaaatacgatactcttcgtgtccacgatccaccaccacgaagcactttcgctccccataattgttg |
21588983 |
T |
|
| Q |
232 |
aagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaat |
323 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
21588984 |
aagcgtatatgatatcaccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaat |
21589076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 13756590 - 13756385
Alignment:
| Q |
115 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
214 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||| ||| ||||| |||||||||||| || ||| ||||||||||||| | ||||||| |
|
|
| T |
13756590 |
gcattcaatgtgttattttaactcacacttgacacattaacatatctatattaagcatgagactctttgtatctactatccaccaccacggaccacttcc |
13756491 |
T |
|
| Q |
215 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
313 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||| | || || |||| ||||||||| |||| |||||| ||||| | ||| ||||| |
|
|
| T |
13756490 |
gctccccaaaaatgttgaagcagatatgatatcaccattgggacttatgtggaagccaacgcttgtgtgaatcgacacattgcagaaagagcaatcacac |
13756391 |
T |
|
| Q |
314 |
aagtga |
319 |
Q |
| |
|
|||||| |
|
|
| T |
13756390 |
aagtga |
13756385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 115 - 289
Target Start/End: Original strand, 23141828 - 23142002
Alignment:
| Q |
115 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
214 |
Q |
| |
|
||||||||||||||||||||| || | ||||||| |||||||||||| ||||| ||||||||||| || |||| ||||||||||||| | ||||||| |
|
|
| T |
23141828 |
gcattcaatgtgttattttaactcatacttgacacgttaacatctctctattaagcatgagactctctgtatctgctatccaccaccacggaccacttcc |
23141927 |
T |
|
| Q |
215 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga |
289 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||| |||||| ||||||| |||| ||||||||| |||| |
|
|
| T |
23141928 |
gctccccgaaaatgttgaagcagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcga |
23142002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 115 - 319
Target Start/End: Original strand, 42797318 - 42797522
Alignment:
| Q |
115 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
214 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||| || ||||| ||||||||||| || |||| |||||||||||| | ||||||| |
|
|
| T |
42797318 |
gcattcaatgtgttattttaactcacacttgacacattaacatctttctattaagcatgagactctctgtatctgctatccaccaccacagaccacttcc |
42797417 |
T |
|
| Q |
215 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
313 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| ||||||| | |||| ||||||||||||| |||| |||||| ||||| | ||| ||||| |
|
|
| T |
42797418 |
gctccccaaaaatgttgaagcagatatgatatcaccattgagacttac-gaggagcaaacacttgtgtgaatcgacacattgcagaaagagcaatcacac |
42797516 |
T |
|
| Q |
314 |
aagtga |
319 |
Q |
| |
|
||||| |
|
|
| T |
42797517 |
gagtga |
42797522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 10901475 - 10901546
Alignment:
| Q |
115 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgt |
186 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||||||||||||||| ||||| | |||||||| ||||| |
|
|
| T |
10901475 |
gcattcaatgtgttattttaactcacatttgatacattaacatctctccattaagtacgagactctccgtgt |
10901546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 32 - 323
Target Start/End: Complemental strand, 36096247 - 36095955
Alignment:
| Q |
32 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
131 |
Q |
| |
|
|||||| |||||| |||||||| || ||||||| || |||| |||||||||| | |||| || ||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
36096247 |
tgagattgacatcgcagttacattcaaaatcttaagagattatgagtcatctcattgatatgttattcaatatcaattatatggcattcaatgtattatt |
36096148 |
T |
|
| Q |
132 |
ttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
231 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||| | || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36096147 |
ttaacccacacttgacacattacaatctctcaattaaatacgatactcttcgtgtccgcgatccaccaccacgaagcacttccgctccccaaaaatgttg |
36096048 |
T |
|
| Q |
232 |
aagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaat |
323 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||||| | |||||||| |
|
|
| T |
36096047 |
aagcgtatatgatatcaccattgggacatacgggggatacaacacttgtgtgattcgacacattgcagaaaaaacaaccacaaaggtgagaat |
36095955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 191 - 323
Target Start/End: Original strand, 12746103 - 12746235
Alignment:
| Q |
191 |
gatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga- |
289 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
12746103 |
gatccaccaccacaaagcatttccgctctccaaaaatgttgaagcgtatatgatatcaccattgggaattacaggggagacaacacttgtgtgattcgat |
12746202 |
T |
|
| Q |
290 |
acattgtagaaaaaacaaccacacaagtgagaat |
323 |
Q |
| |
|
|||||| || | || ||| ||||||||||||||| |
|
|
| T |
12746203 |
acattgcag-agaagcaatcacacaagtgagaat |
12746235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 50331954 - 50332056
Alignment:
| Q |
76 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
175 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
50331954 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaagcatgaa |
50332051 |
T |
|
| Q |
176 |
actct |
180 |
Q |
| |
|
||||| |
|
|
| T |
50332052 |
actct |
50332056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 50332063 - 50332128
Alignment:
| Q |
219 |
cccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtga |
284 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||| ||||||| |||| ||||||||| |
|
|
| T |
50332063 |
cccaaaaatgttgaagcagatatgatatcaccattgggacttatgggggagccaacgcttgtgtga |
50332128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 76 - 301
Target Start/End: Complemental strand, 1599773 - 1599549
Alignment:
| Q |
76 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
175 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
1599773 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaagcatgag |
1599676 |
T |
|
| Q |
176 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
275 |
Q |
| |
|
||||| || |||| |||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||| ||| | |
|
|
| T |
1599675 |
actctctgtatctgctatccaccaccacataccacttccgctcccaaaaaatgttgaagcatatatgatatcacctttgggacttatgggggagccaata |
1599576 |
T |
|
| Q |
276 |
cttgtgtgattcga-acattgtagaaa |
301 |
Q |
| |
|
||||||||| |||| |||||| ||||| |
|
|
| T |
1599575 |
cttgtgtgaatcgacacattgcagaaa |
1599549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 115 - 284
Target Start/End: Complemental strand, 26894957 - 26894788
Alignment:
| Q |
115 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
214 |
Q |
| |
|
|||| |||||||||||||||| |||| |||| | ||||||||||||| ||||| |||||||| | |||||||| ||||||||||| ||| ||||||| |
|
|
| T |
26894957 |
gcatccaatgtgttattttaaatcacacttgatatattaacatctctccattaagtatgagactatccgtgtctgcaatccaccaccatgaaccacttcc |
26894858 |
T |
|
| Q |
215 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtga |
284 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||| |||||||||| |||| || ||||| |||||||| |
|
|
| T |
26894857 |
actcccctaaaatgttgaagtggatattatatcattattgggacttatggggtagccaacagttgtgtga |
26894788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 76 - 284
Target Start/End: Original strand, 33240 - 33445
Alignment:
| Q |
76 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
175 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
33240 |
agtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgag |
33337 |
T |
|
| Q |
176 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
275 |
Q |
| |
|
||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||| | |||||||||| | ||| |||||| |||||| ||||| |
|
|
| T |
33338 |
actctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtatgatatcaacattgagactta-tggggagccaaca |
33436 |
T |
|
| Q |
276 |
cttgtgtga |
284 |
Q |
| |
|
||||||||| |
|
|
| T |
33437 |
cttgtgtga |
33445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 76 - 284
Target Start/End: Original strand, 5788867 - 5789072
Alignment:
| Q |
76 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
175 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
5788867 |
agtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgag |
5788964 |
T |
|
| Q |
176 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
275 |
Q |
| |
|
||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||| | |||||||||| | ||| |||||| |||||| ||||| |
|
|
| T |
5788965 |
actctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtatgatatcaacattgagactta-tggggagccaaca |
5789063 |
T |
|
| Q |
276 |
cttgtgtga |
284 |
Q |
| |
|
||||||||| |
|
|
| T |
5789064 |
cttgtgtga |
5789072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 76 - 319
Target Start/End: Original strand, 3395448 - 3395689
Alignment:
| Q |
76 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
175 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| |||||||| |||||||||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
3395448 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaaagtgttattttaactcacacctgacacattaacatctctccattaagtatgag |
3395545 |
T |
|
| Q |
176 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
275 |
Q |
| |
|
|||||| ||||||| |||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
3395546 |
actctttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattggaactta-tggggagacaaca |
3395644 |
T |
|
| Q |
276 |
cttgtgtgattcga-acattgtagaaaaaacaaccacacaagtga |
319 |
Q |
| |
|
||||||||| |||| || ||| ||||| | ||| ||||||||||| |
|
|
| T |
3395645 |
cttgtgtgaatcgacacgttgcagaaagagcaatcacacaagtga |
3395689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 41754529 - 41754580
Alignment:
| Q |
238 |
atatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga |
289 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||| ||||||||| |||| |
|
|
| T |
41754529 |
atatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcga |
41754580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 33014000 - 33014116
Alignment:
| Q |
208 |
cacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaaca |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
33014000 |
cacttccgctccccaaaaatgttgaagcgtatatgatatcaccattgggacttacatgggagacaacacttgtgtgattcgacacattgcagaaaaaaca |
33014099 |
T |
|
| Q |
307 |
accacacaagtgagaat |
323 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33014100 |
accacacaagtgagaat |
33014116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 317
Target Start/End: Original strand, 38015928 - 38016166
Alignment:
| Q |
76 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
175 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| || || ||||| |
|
|
| T |
38015928 |
agtcatctcacttatatgttgctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccatcaagtatgag |
38016025 |
T |
|
| Q |
176 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
275 |
Q |
| |
|
||| || ||||| |||||||||||||||| |||||||| ||| |||||||||||||| | |||||||||| || |||||||||| |||||| || || |
|
|
| T |
38016026 |
actttt-gtgtccacgatccaccaccacgaaccacttccgttccacaaaaatgttgaagcggatatgatatcgccattgggactta-tggggagccagca |
38016123 |
T |
|
| Q |
276 |
cttgtgtgattcga-acattgtagaaaaaacaaccacacaagt |
317 |
Q |
| |
|
||||||||| |||| | |||| ||||| | ||| ||||||||| |
|
|
| T |
38016124 |
cttgtgtgaatcgatatattgcagaaagagcaatcacacaagt |
38016166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 33013852 - 33013989
Alignment:
| Q |
32 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
131 |
Q |
| |
|
|||||| ||||||| | ||||||||| ||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
33013852 |
tgagattgacatcacaattacatccaagttcttaagacattatgagtcatctcactaatatgttgttcaatatatattatatgaaattcaatgtgttatt |
33013951 |
T |
|
| Q |
132 |
ttaatccacagttgacacattaacatctctcaattaaa |
169 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
33013952 |
ttaacccacacttgacacattagcatctctcaattaaa |
33013989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 115 - 319
Target Start/End: Original strand, 43387132 - 43387335
Alignment:
| Q |
115 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
214 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||||||||||||||| |||| | |||||||| |||||||| |||||| ||||||||| ||||| |
|
|
| T |
43387132 |
gcattcaatgtgtaattttaactcacacttgacacattaacatctctctgttaagtacgagactctccgtgtctgcgatcca-caccacgaaccactttt |
43387230 |
T |
|
| Q |
215 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
313 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||| |||||||||| ||||| |||||||||||||| | || ||| |||||||||| ||| ||||| |
|
|
| T |
43387231 |
gctcccaaaaaatgttgaaacggatatgatatcaccattgggactta-tggggatccaacacttgtgtgaattgacacaatgtagaaaaagcaatcacac |
43387329 |
T |
|
| Q |
314 |
aagtga |
319 |
Q |
| |
|
|||||| |
|
|
| T |
43387330 |
aagtga |
43387335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 321
Target Start/End: Complemental strand, 14503 - 14373
Alignment:
| Q |
192 |
atccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-a |
290 |
Q |
| |
|
|||||||| |||||| ||| |||||||| |||||||||||||| | ||||||||||||| || |||||| || |||| |||||||||||||| || | | |
|
|
| T |
14503 |
atccaccatcacgaaccacatccgctcctcaaaaatgttgaagcggatatgatatcaccattaagacttatggaggagccaacacttgtgtgaatcaaca |
14404 |
T |
|
| Q |
291 |
cattgtagaaaaaacaaccacacaagtgaga |
321 |
Q |
| |
|
||||| ||||| ||| ||||||||||||| |
|
|
| T |
14403 |
cattgaagaaagggcaatcacacaagtgaga |
14373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 14595 - 14538
Alignment:
| Q |
76 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaa |
135 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
14595 |
agtcatctcatttatatgttgttcaacatctactatt--gcattcaatgtgttattttaa |
14538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 248
Target Start/End: Original strand, 50251 - 50384
Alignment:
| Q |
115 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
214 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||| ||||| |||||| ||||| | |||||||| |||| | |||||||||| ||||| |||||| |
|
|
| T |
50251 |
gcattcaacgtgttattttaactgacacttgacatattaaattctctccattaagtacgagactctctatgtccgcgatccaccactacgaaccacttct |
50350 |
T |
|
| Q |
215 |
gctccccaaaaatgttgaagtgtatatgatatca |
248 |
Q |
| |
|
|||||| ||||| ||||||| | ||||||||||| |
|
|
| T |
50351 |
gctcccaaaaaacgttgaagcggatatgatatca |
50384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 17510279 - 17510369
Alignment:
| Q |
143 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
233 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || |||||| ||||||||||| |
|
|
| T |
17510279 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccactcccctaaaatgttgaa |
17510369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 17542935 - 17542845
Alignment:
| Q |
143 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
233 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || |||||| ||||||||||| |
|
|
| T |
17542935 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccactcccctaaaatgttgaa |
17542845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 17474795 - 17474885
Alignment:
| Q |
143 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
233 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || | |||| ||||||||||| |
|
|
| T |
17474795 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccacacccctaaaatgttgaa |
17474885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 17578419 - 17578329
Alignment:
| Q |
143 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
233 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || | |||| ||||||||||| |
|
|
| T |
17578419 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccacacccctaaaatgttgaa |
17578329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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