View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_177 (Length: 321)
Name: NF11737A_low_177
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_177 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 39427377 - 39427057
Alignment:
| Q |
1 |
tcagaaaggaagaagttactgaaggtaattcaattaagtaagaatgatccacgaactcaaatggtggagtttgagtcactgaagaagcaatttgaagaga |
100 |
Q |
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| T |
39427377 |
tcagaaaggaagaagttactgaaggtaattcaattaagtaagaatgatccacaaactcaaatggtggagtttgagtcactgaagaagcaatttgaagaga |
39427278 |
T |
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| Q |
101 |
gggttaagaggcttgagttaaaagagaaaagatgcgaagaaagagtggtggtgcttgagtcaaaggagaagcactttgaaggctgcgtaaatgagatcaa |
200 |
Q |
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| T |
39427277 |
gggttaagaggcttgagttaaaagagaaaagatgcgaagaaagagcggtggtgcttgagtcaaaggagaagcactttgaaggctgcgtaaatgagatcaa |
39427178 |
T |
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| Q |
201 |
gttaaaagagaatcagctcaaagatgaaaggaaggagttgaaattgaagttggagaaatttgtttaccaaaggagggagattgagtctgaaaagacgaat |
300 |
Q |
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| T |
39427177 |
gttaaaagagaatcagctcaaagacgaaaggaaggagtttacattgaagttggagaaatttgattaccaaacgagggagcttgaatctgaaaagaagcat |
39427078 |
T |
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| Q |
301 |
ttcgaaagccagatgaaggag |
321 |
Q |
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| T |
39427077 |
tttgatagccagatgaaggag |
39427057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 39129887 - 39130095
Alignment:
| Q |
4 |
gaaaggaagaagttactgaaggtaattcaattaagtaagaatgatccacgaactcaaatggtggagtttgagtcactgaagaagcaatttgaagagaggg |
103 |
Q |
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| T |
39129887 |
gaaaggaagaagttactcaaggtaacccaattgagtaagaatgatccacatgctcaagtaaagggccttgagtcaatgaagaagcaatttgaagagcagg |
39129986 |
T |
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| Q |
104 |
ttaagaggcttgagttaaaagagaaaagatgcgaagaaagagtggtggtgcttgagtcaaaggagaagcactttgaaggctgcgtaaatgagatcaagtt |
203 |
Q |
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| T |
39129987 |
ttaaagagcttgagttaaaagagaaaaggtgcggagaacaagtggtggagcttgagtcaaaggagaagctctttgaaggccgtgtaaatgagctgaagtt |
39130086 |
T |
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| Q |
204 |
aaaagagaa |
212 |
Q |
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| T |
39130087 |
aaaagagaa |
39130095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 80 - 321
Target Start/End: Original strand, 39143118 - 39143359
Alignment:
| Q |
80 |
tgaagaagcaatttgaagagagggttaagaggcttgagttaaaagagaaaagatgcgaagaaagagtggtggtgcttgagtcaaaggagaagcactttga |
179 |
Q |
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| T |
39143118 |
tgaagaagcaatttgaagagcgggttagggatcttcagttaaaagagaaaaggtgtgcagaacgagcggtggagcttgaggccaaggagaagctctttga |
39143217 |
T |
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| Q |
180 |
aggctgcgtaaatgagatcaagttaaaagagaatcagctcaaagatgaaaggaaggagttgaaattgaagttggagaaatttgtttaccaaaggagggag |
279 |
Q |
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| T |
39143218 |
aggccgtgtaaaggagctcaagttaaaagagaatcggctcaaaggtgaagtgaaggagtttgaattgaagttggagaaatttcattggcaaacgaaggag |
39143317 |
T |
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| Q |
280 |
attgagtctgaaaagacgaatttcgaaagccagatgaaggag |
321 |
Q |
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| T |
39143318 |
cttgaatctaaaaagaagaattttgatagccgggtgaaggag |
39143359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 39123926 - 39124134
Alignment:
| Q |
4 |
gaaaggaagaagttactgaaggtaattcaattaagtaagaatgatccacgaactcaaatggtggagtttgagtcactgaagaagcaatttgaagagaggg |
103 |
Q |
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| T |
39123926 |
gaaaggatgaagtttctgagcgtaatgcaattaagtaagaatgatcaacgtgctcaaatgatggactatgagtcaacgaataagcaatttgaagagcagg |
39124025 |
T |
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| Q |
104 |
ttaagaggcttgagttaaaagagaaaagatgcgaagaaagagtggtggtgcttgagtcaaaggagaagcactttgaaggctgcgtaaatgagatcaagtt |
203 |
Q |
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| T |
39124026 |
ttatggagattaagttaaaagagaaaagctgcagagaacgaatggtggagctcgagtcaaaggagaagctctttaaaggctgtgtaaacaagctcaagtt |
39124125 |
T |
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| Q |
204 |
aaaagagaa |
212 |
Q |
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| T |
39124126 |
aaaagagaa |
39124134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 39495211 - 39495033
Alignment:
| Q |
4 |
gaaaggaagaagttactgaaggtaattcaattaagtaagaatgatccacgaactcaaatggtggagtttgagtcactgaagaagcaatttgaagagaggg |
103 |
Q |
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| T |
39495211 |
gaaaggataaagttacttaggataatgcaattaagtaagaatgatccacgtgctcaagtgaaggactttgagtcaatgaagaagcaatttgatgcccagg |
39495112 |
T |
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| Q |
104 |
ttaagaggcttgagttaaaagagaaaagatgcgaagaaagagtggtggtgcttgagtcaaaggagaagcactttgaagg |
182 |
Q |
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| T |
39495111 |
ttaaggagcttgagttaaaagagaaaaggtacatagaacgagcggtggagcttgagtcaaaggagaagctctttgaagg |
39495033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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