View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_187 (Length: 312)
Name: NF11737A_low_187
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_187 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 33807838 - 33808119
Alignment:
| Q |
12 |
agatggacatcaacaaatgcaatgtctaaaatataggacacggggacaagatgcacacacacaaagatacaaaagggttataaaacatatcattcaaggt |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33807838 |
agatggaca-caacaaatgcaatgtctaaaatataggacacggggacaagatgcacacacacaaagatacaaaagggttataaagcatatcattcaaggt |
33807936 |
T |
|
| Q |
112 |
ttaacaaaacagctttgaaatagtgtgatgcttacccaatctacccttatcatgaatttgagaacttgtagctaacagcctcttgccttggttgattttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33807937 |
ttaacaaaacagctttgaaatagtgtgatgcttacccaagctacccttatcatgaatttgaggacttgtagctaacagcctcttgccttgattgattttt |
33808036 |
T |
|
| Q |
212 |
ctgcaaaacacgtcaaaacggaaatcaaccaaattgttactttaagagacacgtatatttatgcactcaatgcccactgatgt |
294 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808037 |
ctgcaaaacacgtcaaaacagatatcaaccaaattgttactttaagagacacgtatatttatgcactcaatgcccactgatgt |
33808119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University