View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_189 (Length: 310)

Name: NF11737A_low_189
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_189
NF11737A_low_189
[»] chr3 (22 HSPs)
chr3 (19-291)||(20045976-20046248)
chr3 (25-255)||(20016230-20016458)
chr3 (25-279)||(19812139-19812393)
chr3 (156-288)||(19848980-19849115)
chr3 (156-288)||(20036596-20036731)
chr3 (157-255)||(19956075-19956173)
chr3 (161-288)||(26646999-26647126)
chr3 (157-249)||(19838384-19838476)
chr3 (166-249)||(19858072-19858155)
chr3 (156-253)||(19943710-19943805)
chr3 (157-255)||(24840003-24840101)
chr3 (178-287)||(30914655-30914764)
chr3 (20-114)||(19838238-19838332)
chr3 (161-254)||(19951119-19951212)
chr3 (156-288)||(19818547-19818679)
chr3 (20-110)||(19955929-19956019)
chr3 (186-253)||(19853532-19853599)
chr3 (164-256)||(19989520-19989612)
chr3 (169-288)||(26653155-26653274)
chr3 (20-101)||(19818411-19818492)
chr3 (25-119)||(19989381-19989475)
chr3 (19-115)||(26646863-26646959)
[»] chr4 (2 HSPs)
chr4 (19-268)||(6397754-6398003)
chr4 (19-288)||(6398114-6398383)
[»] chr8 (3 HSPs)
chr8 (161-253)||(22652119-22652211)
chr8 (166-261)||(22689678-22689773)
chr8 (186-291)||(22685673-22685778)
[»] chr7 (11 HSPs)
chr7 (198-291)||(12581424-12581517)
chr7 (97-201)||(12581117-12581221)
chr7 (198-291)||(12497241-12497334)
chr7 (198-291)||(12521106-12521199)
chr7 (97-202)||(12496933-12497038)
chr7 (97-202)||(12520798-12520903)
chr7 (198-282)||(12519795-12519878)
chr7 (198-282)||(12580084-12580167)
chr7 (97-204)||(12496216-12496323)
chr7 (102-204)||(12520086-12520188)
chr7 (102-204)||(12580375-12580477)
[»] chr1 (1 HSPs)
chr1 (161-288)||(1717209-1717336)
[»] chr5 (4 HSPs)
chr5 (165-291)||(9815036-9815162)
chr5 (159-249)||(26354962-26355052)
chr5 (52-115)||(38435293-38435356)
chr5 (34-101)||(26355110-26355177)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 20045976 - 20046248
Alignment:
Q  19 atcattgttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgatccttgaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  20045976 atcattgttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaataaattgatccatgaaa 20046075  T
Q  119 ggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  20046076 ggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacacgaagccttcct 20046175  T
Q  219 tactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctatt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20046176 tactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctatt 20046248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 20016458 - 20016230
Alignment:
Q  25 gttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgatccttgaaaggaagc 124  Q
    |||||||| ||||||||| |||||||||||| |||||||| |  | || |||||  | ||||  ||||||| ||||||||||||||||||| |||  |||    
T  20016458 gttttgggtggttaccctgtcattggcgatcctgttttcatctcacttgaagacacaaaaat--gagaggtagaaaacaaattgatccttgcaagacagc 20016361  T
Q  125 agcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactac 224  Q
    | ||||| ||| ||||  |  |||| || ||||||||| | |||||||||||||||   ||||||||||||||||||||||||||||| |||||| ||||    
T  20016360 aacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctac 20016261  T
Q  225 ttggttgtcaatttttgtttttcctcataaa 255  Q
    |||| |||||||||||||||| |||||||||    
T  20016260 ttggctgtcaatttttgttttccctcataaa 20016230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 25 - 279
Target Start/End: Original strand, 19812139 - 19812393
Alignment:
Q  25 gttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgatccttgaaaggaagc 124  Q
    |||||||| ||||||||||||||||| |||| | |||| ||||||||| |||||||||||||||||||||||||||| ||  | ||||||| |||   |     
T  19812139 gttttggggggttaccctatcattggtgatcctatttttaccaaagttcaagaccaagaaatgagagaggtggaaaagaagctcatccttgcaagacgga 19812238  T
Q  125 agcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactac 224  Q
    | | |    | || ||  | ||| | |||  |||||||  ||||||  |||| ||| | | ||||||||||||||||||||||||||| |||||| ||||    
T  19812239 aaccttggcagagtaaaaaaggtaaggctaccacatcaaaatggatcaatattttcgttggtaaaggtagtgaaattgaacatgaagcatttcttgctac 19812338  T
Q  225 ttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttt 279  Q
    ||||||||||||||||||||||||||||||| || |||||||||| | |||||||    
T  19812339 ttggttgtcaatttttgtttttcctcataaatatttggtgaaaaagtctttgttt 19812393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 19848980 - 19849115
Alignment:
Q  156 cacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaa 255  Q
    ||||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  19848980 cacatcatactggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaa 19849079  T
Q  256 a---atatggtgaaaaattgtttgttttctattgct 288  Q
    |   || ||||||||| || ||||||| ||||||||    
T  19849080 aactatttggtgaaaagttctttgtttcctattgct 19849115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 20036731 - 20036596
Alignment:
Q  156 cacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaa 255  Q
    ||||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  20036731 cacatcatactggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaa 20036632  T
Q  256 a---atatggtgaaaaattgtttgttttctattgct 288  Q
    |   || ||||||||| || ||||||| ||||||||    
T  20036631 aactatttggtgaaaagttctttgtttcctattgct 20036596  T

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Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 19956075 - 19956173
Alignment:
Q  157 acatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaa 255  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  19956075 acatcactatggatggatattttcattgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctcataaa 19956173  T

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Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 26646999 - 26647126
Alignment:
Q  161 cattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatat 260  Q
    |||||||||| ||||  ||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||| ||| |||||||||||||  |||| |    
T  26646999 cattatggatcgatagtttcatggataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctcatctaaattt 26647098  T
Q  261 ggtgaaaaattgtttgttttctattgct 288  Q
    |||||||| |||||||||| ||||||||    
T  26647099 ggtgaaaagttgtttgtttcctattgct 26647126  T

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Target: chr3; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 19838384 - 19838476
Alignment:
Q  157 acatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcct 249  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  19838384 acatcactatggatggatattttcatcgataaaggtagcgaaattgaacatgaagcttttctagctacttggttgtcaatttttgtttttcct 19838476  T

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Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 19858072 - 19858155
Alignment:
Q  166 tggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcct 249  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||    
T  19858072 tggatggatattttcatcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcct 19858155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 156 - 253
Target Start/End: Original strand, 19943710 - 19943805
Alignment:
Q  156 cacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcata 253  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||  ||||||||||||||||    
T  19943710 cacatcagtgtggatggatattttcatcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaa--tttgtttttcctcata 19943805  T

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Target: chr3; HSP #11
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 24840101 - 24840003
Alignment:
Q  157 acatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaa 255  Q
    |||||| | ||||||||||| ||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  24840101 acatcagtgtggatggatattttcatcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaa 24840003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 30914655 - 30914764
Alignment:
Q  178 ttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgt 277  Q
    ||||| ||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| || ||||||||| || |||||    
T  30914655 ttcattgataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctcacaaagatttggtgaaaagttttttgt 30914754  T
Q  278 tttctattgc 287  Q
    || |||||||    
T  30914755 ttcctattgc 30914764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 19838238 - 19838332
Alignment:
Q  20 tcattgttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgatcctt 114  Q
    |||| |||||||| ||||||||| ||||||| |||  |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  19838238 tcatggttttggggggttaccctgtcattggtgattctgttttcaccgaagtcaaagaccaagaaatgagagaggtggaaaacaaattgatcctt 19838332  T

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Target: chr3; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 19951119 - 19951212
Alignment:
Q  161 cattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataa 254  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||  ||||||||||||| |||||||||||||| ||||    
T  19951119 cattatggatggatattttcactgataaaggtagtgaaattgaacatgaagccttccttgttacttggttgtcactttttgtttttcctaataa 19951212  T

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Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 19818547 - 19818679
Alignment:
Q  156 cacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaa 255  Q
    |||||||  ||||||||| || || || | ||||||||  ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||     
T  19818547 cacatcaaaatggatggaaatttttattggtaaaggtaccgaaattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataag 19818646  T
Q  256 aatatggtgaaaaattgtttgttttctattgct 288  Q
    ||| |||||||||||| | ||||| || |||||    
T  19818647 aatttggtgaaaaattatctgtttcctgttgct 19818679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 19955929 - 19956019
Alignment:
Q  20 tcattgttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgat 110  Q
    |||| |||||||| ||||||||| ||||||| |||  |||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  19955929 tcatggttttggggggttaccctgtcattggtgattctgttttcaccgaagtcaaagaccaagaaatgagagaggtggaaaacaaattgat 19956019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 19853532 - 19853599
Alignment:
Q  186 taaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcata 253  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  19853532 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcata 19853599  T

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Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 19989520 - 19989612
Alignment:
Q  164 tatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaa 256  Q
    ||||||||||| | ||||| |||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||  |||| ||||||    
T  19989520 tatggatggatgttttcattgataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtcaatttttgttcatccttataaaa 19989612  T

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Target: chr3; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 26653155 - 26653274
Alignment:
Q  169 atggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaa 268  Q
    |||||||| ||||| ||  |||||||||||||||||||||| || || ||| |  |||||||||||||||||||||||||||||| | |  | |||||||    
T  26653155 atggatattttcattgactaaggtagtgaaattgaacatgatgcattccttgcagcttggttgtcaatttttgtttttcctcatatagaattagtgaaaa 26653254  T
Q  269 attgtttgttttctattgct 288  Q
     || ||||||||||||||||    
T  26653255 gttctttgttttctattgct 26653274  T

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Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 19818411 - 19818492
Alignment:
Q  20 tcattgttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaa 101  Q
    |||| |||||||| ||||| ||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||| |||||    
T  19818411 tcatagttttggggggttatcctatcattggtgatcctgttttcatcaaagttaaagatcaagaaatgagagaggttgaaaa 19818492  T

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Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 19989381 - 19989475
Alignment:
Q  25 gttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgatccttgaaag 119  Q
    ||||| || |||||||||||  |||| |||| ||||||||  | | || ||||||||||||||| ||||||||||||  ||||||||||||||||    
T  19989381 gttttagggggttaccctattcttggtgatcctgttttcattacacttcaagaccaagaaatgaaagaggtggaaaaggaattgatccttgaaag 19989475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 26646863 - 26646959
Alignment:
Q  19 atcattgttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgatccttg 115  Q
    ||||| |||||||| ||||| ||||| ||||| |||| ||||||||    | || |||||||||||||||||||||||||||| ||| | |||||||    
T  26646863 atcatggttttggggggttatcctattattggggatcctgttttcatttcacttgaagaccaagaaatgagagaggtggaaaagaaactcatccttg 26646959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 6398003 - 6397754
Alignment:
Q  19 atcattgttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgatccttgaaa 118  Q
    |||||||| ||||| |  |||||||||| ||| |||| |||||||||| |||||||||||||||||||| || |||||||||| ||||||||||| ||||    
T  6398003 atcattgtcttgggggtctaccctatcactggggatcctgttttcacccaagttaaagaccaagaaatgtgataggtggaaaataaattgatcctagaaa 6397904  T
Q  119 ggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttct 218  Q
    | ||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6397903 gaaagcaacttacaaataggaatgaaggtcatgcttacatatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagccttcct 6397804  T
Q  219 tactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaa 268  Q
    | |||| ||||||||||||| || |||||||| |||||| ||||||||||    
T  6397803 tgctacctggttgtcaatttgtgcttttcctcctaaaaaaatggtgaaaa 6397754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 6398114 - 6398383
Alignment:
Q  19 atcattgttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgatccttgaaa 118  Q
    |||||| ||||||| || ||||| ||||||||| ||| ||||||||   | ||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  6398114 atcattattttggggggatacccgatcattggcaatcttgttttcaatgatgttaaagactaataaatgagagaggtggaaaacaaattgatcctagaaa 6398213  T
Q  119 ggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttct 218  Q
    | ||| | ||||| |||| |||  | ||||   |||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||    
T  6398214 gaaagaaacttaccaatacgaataaaggtcccacttacacatagttatggatggatatgtttatctataaaggtagtgaaattgaacatgaagccttcct 6398313  T
Q  219 tactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgct 288  Q
    | ||| |||||||| ||||||||||||||||  |||||  |||||||||| |||||||||||||||||||    
T  6398314 tgctaattggttgttaatttttgtttttcctagtaaaacaatggtgaaaagttgtttgttttctattgct 6398383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 22652211 - 22652119
Alignment:
Q  161 cattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcata 253  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||    
T  22652211 cattatggatggatattttcatcgataaaggtagtgaaattgaacatgaagcgttccttgctacttggttgtcaatttttgtttttgctcata 22652119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 22689773 - 22689678
Alignment:
Q  166 tggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatg 261  Q
    ||||||||| | ||||||||||| |||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  22689773 tggatggatgttttcatcgataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaaaatatg 22689678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 22685778 - 22685673
Alignment:
Q  186 taaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctatt 285  Q
    |||||||||||||||||| |||||||| |||||| || ||||||||||| ||||||||||||||||||||| | ||||||||| || | ||||| | |||    
T  22685778 taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaaattttggtgaaaacttctatgtttccgatt 22685679  T
Q  286 gctatt 291  Q
    ||||||    
T  22685678 gctatt 22685673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 12581424 - 12581517
Alignment:
Q  198 aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctatt 291  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||| || ||| |||||||||| || |||||||||||||||||||    
T  12581424 aattgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctcgtagaaaaatggtgaaaagttatttgttttctattgctatt 12581517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 12581221 - 12581117
Alignment:
Q  97 gaaaacaaattgatccttgaaaggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtg 196  Q
    |||| |||||||||||||||||| ||||| |||||||||||||| || |||||   ||||||||||||||||||||||||||||| ||||||||||| ||    
T  12581221 gaaagcaaattgatccttgaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaatg 12581122  T
Q  197 aaatt 201  Q
    |||||    
T  12581121 aaatt 12581117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 12497241 - 12497334
Alignment:
Q  198 aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctatt 291  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||| ||||||| || || |||||||||||||||||||    
T  12497241 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcatagaaaaatggtgataagttatttgttttctattgctatt 12497334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 12521106 - 12521199
Alignment:
Q  198 aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctatt 291  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||| ||||||| || || |||||||||||||||||||    
T  12521106 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcatagaaaaatggtgataagttatttgttttctattgctatt 12521199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 12497038 - 12496933
Alignment:
Q  97 gaaaacaaattgatccttgaaaggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtg 196  Q
    |||| |||| |||||||| |||| ||||| |||||||||||||| || |||||   ||||||||||||||||||||||||||||| ||||||||||| ||    
T  12497038 gaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaatg 12496939  T
Q  197 aaattg 202  Q
    ||||||    
T  12496938 aaattg 12496933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 12520903 - 12520798
Alignment:
Q  97 gaaaacaaattgatccttgaaaggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtg 196  Q
    |||| |||| |||||||| |||| ||||| |||||||||||||| || |||||   ||||||||||||||||||||||||||||| ||||||||||| ||    
T  12520903 gaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaatg 12520804  T
Q  197 aaattg 202  Q
    ||||||    
T  12520803 aaattg 12520798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 12519878 - 12519795
Alignment:
Q  198 aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttct 282  Q
    |||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  12519878 aattgaacatgaagccttccttttaacttggttgtcaatttttgtttttcctcataaaaa-atggtgacaaattgtttgttttct 12519795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 12580167 - 12580084
Alignment:
Q  198 aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttct 282  Q
    |||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  12580167 aattgaacatgaggccttcctttttacttggttgtcaatttttgtttttcctcataaaaa-atggtgacaagttgtttgttttct 12580084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 12496216 - 12496323
Alignment:
Q  97 gaaaacaaattgatccttgaaaggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtg 196  Q
    |||| ||||||||||||||||||    || | |||||||| ||| || |||||  ||||| |||||||||||||||||||||||||||||||| ||||||    
T  12496216 gaaagcaaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgttcatcgataaatgtagtg 12496315  T
Q  197 aaattgaa 204  Q
    ||||||||    
T  12496316 aaattgaa 12496323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 12520086 - 12520188
Alignment:
Q  102 caaattgatccttgaaaggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtgaaatt 201  Q
    ||||||||||||||||||    || | |||||||| ||| || |||||  ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  12520086 caaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgttcatcgataaatgtagtgaaatt 12520185  T
Q  202 gaa 204  Q
    |||    
T  12520186 gaa 12520188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 12580375 - 12580477
Alignment:
Q  102 caaattgatccttgaaaggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaaggtagtgaaatt 201  Q
    ||||||||||||||||||    || | |||||||| ||| || |||||  ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  12580375 caaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgttcatcgataaatgtagtgaaatt 12580474  T
Q  202 gaa 204  Q
    |||    
T  12580475 gaa 12580477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 1717209 - 1717336
Alignment:
Q  161 cattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatat 260  Q
    |||||||||||||| | ||  | ||||||||||||||||||||||||||||| |||||| |||||||||||||  ||| ||||||||||||||||  | |    
T  1717209 cattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagcttt 1717308  T
Q  261 ggtgaaaaattgtttgttttctattgct 288  Q
    ||||||||| | ||||||| ||||||||    
T  1717309 ggtgaaaaaatctttgtttcctattgct 1717336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 165 - 291
Target Start/End: Original strand, 9815036 - 9815162
Alignment:
Q  165 atggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtg 264  Q
    |||||||||| | |||||||| ||||||||||||||||| |||||||| ||  || |||| ||||||||||| ||||||||  ||||||||  | |||||    
T  9815036 atggatggattttttcatcgacaaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaatctttggtg 9815135  T
Q  265 aaaaattgtttgttttctattgctatt 291  Q
    |||| || |||||||||||||||||||    
T  9815136 aaaagttctttgttttctattgctatt 9815162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 26355052 - 26354962
Alignment:
Q  159 atcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcct 249  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||||||||| ||  ||  | ||||||| ||||||||||||||||||    
T  26355052 atcattatggatggatgttttcatggataaaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtttttcct 26354962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 38435356 - 38435293
Alignment:
Q  52 gatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaacaaattgatccttg 115  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||||||| |||||||| ||||    
T  38435356 gatcctgttttcaccacagttgaagaccaagaaatgagagaggtggaaaagaaattgatacttg 38435293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 26355177 - 26355110
Alignment:
Q  34 ggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgagagaggtggaaaa 101  Q
    ||||||||| ||||||| |||| | ||||| | || |||||||||| ||||||||||| |||||||||    
T  26355177 ggttaccctgtcattggtgatcctattttcgcgaatgttaaagaccgagaaatgagagtggtggaaaa 26355110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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