View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_190 (Length: 309)
Name: NF11737A_low_190
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_190 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 29442464 - 29442593
Alignment:
| Q |
173 |
ctgtgttgcatttgggtcgtacatggagaggaagaaaggaaaaaccctaa-------accctaactagaaccttccttccttccttccaatggcggatct |
265 |
Q |
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| T |
29442464 |
ctgtgttgcatttgggtcgtacaaggagaggaagaaaggaaaaaccctaaggcctaaaccctaactagaacctt----ccttccttccaatggtggatct |
29442559 |
T |
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| Q |
266 |
tccgccggagatacttaccggaatcctctctctg |
299 |
Q |
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| T |
29442560 |
tccgccggagatacttaccggaatcctctctctg |
29442593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 29442311 - 29442391
Alignment:
| Q |
21 |
aataaaacagagagaatcataaatgaaggatattaactcagagtaattcataattcgtgcgtccaagatcacgtaatcaag |
101 |
Q |
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| T |
29442311 |
aataaaacagagagaatcataaatgaaggatattaactcagagtaattcataattcgtgcgtccaagatcatgtaatcaag |
29442391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 29424226 - 29424129
Alignment:
| Q |
201 |
aggaagaaaggaaaaaccctaaaccctaactagaaccttccttccttccttccaatggcggatcttccgccggagatacttaccggaatcctctctctg |
299 |
Q |
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| T |
29424226 |
aggaagaaatgaaaaactctaaaccctagctagaacctaacttccaagct-ccaatgacggatcttccgccggagatactcaccggaatcctctctctg |
29424129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 29452537 - 29452585
Alignment:
| Q |
251 |
tccaatggcggatcttccgccggagatacttaccggaatcctctctctg |
299 |
Q |
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| T |
29452537 |
tccaatggcggatcttccgccggagatacttaccggtatcctctctctg |
29452585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 29452466 - 29452503
Alignment:
| Q |
216 |
accctaaaccctaactagaaccttccttccttccttcc |
253 |
Q |
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| T |
29452466 |
accctaaaccctagctacaaccttccttccttccttcc |
29452503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 10354157 - 10354101
Alignment:
| Q |
204 |
aagaaaggaaaaaccctaaaccctaactagaaccttccttccttccttccaatggcgg |
261 |
Q |
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| T |
10354157 |
aagaaatgaaaaaccctaaaccctagc-agaaccttcattccttccttacaatggcgg |
10354101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 9283343 - 9283404
Alignment:
| Q |
237 |
cttccttccttccttccaatggcg---gatcttccgccggagatacttaccggaatcctctc |
295 |
Q |
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| T |
9283343 |
cttccttccttccttccaatggcgtccgatcttccgccggacatacttgccgaaatcttctc |
9283404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 10336785 - 10336751
Alignment:
| Q |
240 |
ccttccttccttccaatggcggatcttccgccgga |
274 |
Q |
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| T |
10336785 |
ccttccttccttacaatggcggatcttccgccgga |
10336751 |
T |
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