View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_191 (Length: 309)
Name: NF11737A_low_191
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_191 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: scaffold0082 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 51954 - 52246
Alignment:
| Q |
15 |
ggacatcacttttcccttggttggatggaagtagcctcgtctcgtggcgccggtaccgaccatcgcacgagcagagtggccatttcattcagcactatct |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51954 |
ggacttcacttttcccttggttggatggaagtagcctcgtctcgtggcgccggtatcgaccatcgcacgagcagagtggccatttcattcagcactatct |
52053 |
T |
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| Q |
115 |
caacatacataagcccagcagacgtaggcttctaatgggtgatcgcattccgcaactgtaacggattcaccctaggggttcttccctcttgtcctcggca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52054 |
caacatacataagcccagcagacgtaggcttctaatgggtgatcgcattccgcaactgtaacggattcaccctaggggttcttccctcttgtcctcggca |
52153 |
T |
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| Q |
215 |
accagcaagtttctccttcatcggacaatctcgtgcctgaggaggactcttacaaatgaaagagccagagtccgccttagaaggccttctttg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52154 |
accagcaagtttctccttcatcggacaatctcgtgcctgaggaggactcttacaaatgaaagagccagagtccgccttagaaggccttctttg |
52246 |
T |
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