View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_192 (Length: 308)
Name: NF11737A_low_192
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_192 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 38867874 - 38867581
Alignment:
| Q |
18 |
gcatgaggttggtttcacagtggctcaatagtgctattctttccttttgccaattgtaattaaaaaactgaaaagtaaaataatactccatatttctaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38867874 |
gcatgaggttggtttcacagtggctcaatagtgctattctttccttttgccaattgtaattaaaaaactgaaaagtaaaatgatactccatatttctaga |
38867775 |
T |
|
| Q |
118 |
ttgaaaggggttgaatgagtgttatttgatg--------nnnnnnnnnngctgtttcattcttttgaagcatgaacttctcaaactgtatgtattttatt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| | | ||||||||||||||| |
|
|
| T |
38867774 |
ttgaaaggggttgaatgagtgttatttgatgtttttttttttttttttggctgtttcatttttttgaagcaggaacttctgatattgtatgtattttatt |
38867675 |
T |
|
| Q |
210 |
caactactatttactatttagtttcattcttctg-aatagacccttcacagttcacacagacattcaccatatcattgccttgatattgttcga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
38867674 |
caactactatttactatttagtttcattcttctgaaatagacccttcacagttcacacagacactcaccatatcattgccttgattttgttcga |
38867581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 38598804 - 38598698
Alignment:
| Q |
36 |
agtggctcaatagtgctattctttccttttgccaattgtaattaaaaaactgaaaagtaaaataatactccatatttctagattgaaaggggttgaatga |
135 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38598804 |
agtgactcaatagtgctatacttttcttttgccaattgtcattaaagaactgaaaagtgaaataatactccatattgttagattgaaaggggttgaatga |
38598705 |
T |
|
| Q |
136 |
gtgttat |
142 |
Q |
| |
|
||||||| |
|
|
| T |
38598704 |
gtgttat |
38598698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 39953726 - 39953790
Alignment:
| Q |
75 |
aattaaaaaactgaaaagtaaaataatactccatatttctagattgaaaggggttgaatgagtgt |
139 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39953726 |
aattaaagaactgaaaagtgaaataatactccatattgctagattgaaaggggttgaatgagtgt |
39953790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University