View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_194 (Length: 306)
Name: NF11737A_low_194
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_194 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0242 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 45718644 - 45718932
Alignment:
| Q |
18 |
acatccgaaccatcttcttagcagccggtacttgcttttccaccgcagctagctcaacccccgaaaaaaccctaggcgtttgacccgttgtatcctcaac |
117 |
Q |
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||||||||||||||||||||||||| |||| || ||||||||| | ||||||||||||||||| ||| |||||| ||||||||| || ||||||||| |
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| T |
45718644 |
acatccgaaccatcttcttagcagctggtaactgtttttccaccacggctagctcaacccccgacaaatccctagacgtttgacctgtcgtatcctcagg |
45718743 |
T |
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| Q |
118 |
gacaccttcaccccgtccttgtccatgcttaccttttccatctcggatcgtcccaaccacatccccgacccgaaccattttaacgcaaccctcttccgcc |
217 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
45718744 |
tacaccttcaccccttcctagtccatgcttaccttttccatctcggatcgtcacaaccacatccccgacccgaaccactttaacgcaaccctcatccgcc |
45718843 |
T |
|
| Q |
218 |
gcatcatttaacacgtccatacacccttttccattccataatcttttgtctacactcttcaataagtcgggtccaccaccttcctttga |
306 |
Q |
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| T |
45718844 |
gcatccttaaacacgtccttacacccttttccagtccataaactgttgtctacactcttcaataagtcgggtccaccaccttcctttga |
45718932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 47423626 - 47423689
Alignment:
| Q |
18 |
acatccgaaccatcttcttagcagccggtacttgcttttccaccgcagctagctcaacccccga |
81 |
Q |
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| T |
47423626 |
acatccgaaccctcttcttagcagctggtaattgtttttccaccacagctagttcagcccccga |
47423689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 1161 - 1449
Alignment:
| Q |
18 |
acatccgaaccatcttcttagcagccggtacttgcttttccaccgcagctagctcaacccccgaaaaaaccctaggcgtttgacccgttgtatcctcaac |
117 |
Q |
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| T |
1161 |
acatccgaaccaacttcttagcaaccggtaactgctttgccaccacaactagctcatcccccgacaaatccctagacgtttgccccatcttaacctcatc |
1260 |
T |
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| Q |
118 |
gacaccttcaccccgtccttgtccatgcttaccttttccatctcggatcgtcccaaccacatccccgacccgaaccattttaacgcaaccctcttccgcc |
217 |
Q |
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||||||| |||||| ||| ||||||||||| ||| ||||||| || |||||| ||||||| |||||||||||||||| |||||| |||||||| ||| || |
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| T |
1261 |
gacacctacaccccttccctgtccatgctttcctattccatcccgaatcgtcacaaccacctccccgacccgaaccactttaacacaaccctcatccacc |
1360 |
T |
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| Q |
218 |
gcatcatttaacacgtccatacacccttttccattccataatcttttgtctacactcttcaataagtcgggtccaccaccttcctttga |
306 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |||| |||| ||||||||||||| |
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| T |
1361 |
tcatcgtttaacacgtccatacgcccttttccattccataatcttttatctacacttttcaataaatcggatccatcaccttcctttga |
1449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 4933446 - 4933158
Alignment:
| Q |
18 |
acatccgaaccatcttcttagcagccggtacttgcttttccaccgcagctagctcaacccccgaaaaaaccctaggcgtttgacccgttgtatcctcaac |
117 |
Q |
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||||||||||| ||||||||||||| |||| ||| ||||||||| ||||||| ||| ||||||| || ||| | | ||||||| || || ||||| | |
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| T |
4933446 |
acatccgaaccctcttcttagcagctggtaattgtttttccaccacagctagttcagcccccgacaagtcccgcgacatttgacctgtcgtgacctcagc |
4933347 |
T |
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| Q |
118 |
gacaccttcaccccgtccttgtccatgcttaccttttccatctcggatcgtcccaaccacatccccgacccgaaccattttaacgcaaccctcttccgcc |
217 |
Q |
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||||||||| ||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
4933346 |
tacaccttcatcccttcctagtccatgtttaccttttccatctcggatcgtcacaaccacatccccgacccgaaccactttaacgcaaccctcagtcgcc |
4933247 |
T |
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| Q |
218 |
gcatcatttaacacgtccatacacccttttccattccataatcttttgtctacactcttcaataagtcgggtccaccaccttcctttga |
306 |
Q |
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| T |
4933246 |
gcatcctttaacacatccttacacccatttccattccataaacttttgtctactctcttcaataggtcgggtccactaccttcgtttga |
4933158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 17725608 - 17725675
Alignment:
| Q |
149 |
ccttttccatctcggatcgtcccaaccacatccccgacccgaaccattttaacgcaaccctcttccgc |
216 |
Q |
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| T |
17725608 |
cctttaccatcacgaatcgtcacaaccacatcccctaccctcaccactttaacgcaacgctcttccgc |
17725675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 23243258 - 23243385
Alignment:
| Q |
139 |
tccatgcttaccttttccatctcggatcgtcccaaccacatccccgacccgaaccattttaacgcaaccctcttccgccgcatcatttaacacgtccata |
238 |
Q |
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| T |
23243258 |
tccatgcttaccttttccatcatgaatcgtcacaaccacgtcccctaccctcaccactttaacacgacactcttccgccgcatcatttaacacatccaaa |
23243357 |
T |
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| Q |
239 |
cacccttttccattccataatcttttgt |
266 |
Q |
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| T |
23243358 |
ctccctttcccattccataaccttttgt |
23243385 |
T |
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