View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_195 (Length: 306)

Name: NF11737A_low_195
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_195
NF11737A_low_195
[»] chr2 (1 HSPs)
chr2 (22-306)||(20670579-20670863)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 306
Target Start/End: Original strand, 20670579 - 20670863
Alignment:
Q  22 cattcttgatgcactaataggatcaggagacacaagcgtaaacaaatgggtaagcatcttatcaatctcacatccatcacttagcctaacactcttcatc 121  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  20670579 cattcttgatgcactaataggatcaggagacacaagcataaacaaatgggtaagcatcttatcaatctcccatccatcacttagcctaacactcttcatt 20670678  T
Q  122 cctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctcaacgtctcgtctacactgacctcctcctcctcc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20670679 cctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctcaacgtctcgtctacgctgacctcctcctcctcc 20670778  T
Q  222 ctcgttactctcgtatacctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaatttcacccttgatga 306  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20670779 ctcgttactctcgtatccctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaatttcacccttgatga 20670863  T

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