View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_197 (Length: 305)
Name: NF11737A_low_197
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_197 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 45148839 - 45149126
Alignment:
| Q |
2 |
caatggtgttttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgctgggaaaaagaaaaatgacatacaatgtgatga |
101 |
Q |
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| T |
45148839 |
caatggtgttt-gcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgccgggaaaaagagagatggcatacaatgtgatga |
45148937 |
T |
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| Q |
102 |
ttgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatgatcaacgg |
201 |
Q |
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| T |
45148938 |
ttgcaggatatgtgcaatacaagaaaatggatatggcaagggaattgtttgaggcaatgccttgtcggaatgtaggttcatggaataccattatcagcgg |
45149037 |
T |
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| Q |
202 |
ctatggtcagaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattg |
290 |
Q |
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| T |
45149038 |
ctatggtcagaacggagatattgctcaagctagggaattgtttgacatgatgactcagcgcgattgtgtatcttgggcggcaattattg |
45149126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 290
Target Start/End: Original strand, 45165284 - 45165487
Alignment:
| Q |
87 |
catacaatgtgatgattgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaa |
186 |
Q |
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| T |
45165284 |
catacaatgcaatgattgcgggttatgtgcaaactaagaaaatggacatcgcaagggagttgtttgagtctatgccctgtcggaatataagttcatggaa |
45165383 |
T |
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| Q |
187 |
taccatgatcaacggctatggtcagaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaatt |
286 |
Q |
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| T |
45165384 |
taccatgattacaggctatggtcagattggagacattgctcaggctagaaaattctttgatatgatgccacagcgtgactgtgtatcttgggcggctatt |
45165483 |
T |
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| Q |
287 |
attg |
290 |
Q |
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| T |
45165484 |
attg |
45165487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 2 - 290
Target Start/End: Complemental strand, 24137061 - 24136776
Alignment:
| Q |
2 |
caatggtgttttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgctgggaaaaagaaaaatgacatacaatgtgatga |
101 |
Q |
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| T |
24137061 |
caatggtgttt-gcatatgtgcatagtggaatgttggatgaagcgagaggagttttcgatgaaatgccgggaaaaagaaagatgacatacaatgtgatga |
24136963 |
T |
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| Q |
102 |
ttgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatgatcaacgg |
201 |
Q |
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| T |
24136962 |
ttgcatgatatgtgcaaaacaagaaaatggatatgg-aagggaattgtatgaggtaatgccttgtcagaatgtaggttcctggaa-accatgatcaacgg |
24136865 |
T |
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| Q |
202 |
ctatggtcagaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattg |
290 |
Q |
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| T |
24136864 |
ctatggtcagaacgaagatattgctcaagctaggaaattgtttgacatgatggctcaacgcgattgtgcatcttgggaagcaattattg |
24136776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 24134742 - 24134463
Alignment:
| Q |
11 |
tttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgctgggaaaaagaaaaatgacatacaatgtgatgattgtaggat |
110 |
Q |
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| T |
24134742 |
tttgcatatgtgcagagtggaatgttggatcatgcgagaagagttttcgatgaaatgccgggaaaatgaaagatgacatacaatgtgatggttaagggaa |
24134643 |
T |
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| Q |
111 |
atgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatgatcaacggctatggtca |
210 |
Q |
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| T |
24134642 |
atgtgcaatacaagcaaatggatatggcaagggaattgtttgaggcaatgccatgttggaatgtaggttcgtggaataccatgatcaacggctatgatca |
24134543 |
T |
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| Q |
211 |
gaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattg |
290 |
Q |
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| T |
24134542 |
gaaaggaaatattgctcaagttggcaaattgtttgacatgatggctaaccgcgattgtgtatcttgggtggcaattattg |
24134463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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