View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_198 (Length: 305)

Name: NF11737A_low_198
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_198
NF11737A_low_198
[»] chr1 (10 HSPs)
chr1 (8-305)||(16101316-16101615)
chr1 (10-305)||(14654841-14655138)
chr1 (177-305)||(16104772-16104900)
chr1 (178-305)||(19656889-19657016)
chr1 (178-305)||(14650841-14650969)
chr1 (178-305)||(14660632-14660760)
chr1 (178-305)||(17478215-17478342)
chr1 (178-292)||(29287704-29287817)
chr1 (178-246)||(17652807-17652875)
chr1 (178-249)||(47050059-47050130)
[»] chr5 (5 HSPs)
chr5 (10-305)||(5518806-5519102)
chr5 (27-141)||(38978534-38978649)
chr5 (178-286)||(42786077-42786185)
chr5 (177-305)||(27197779-27197908)
chr5 (180-298)||(15599416-15599535)
[»] chr3 (7 HSPs)
chr3 (163-294)||(7688409-7688541)
chr3 (178-305)||(5705065-5705192)
chr3 (178-305)||(28104386-28104514)
chr3 (178-305)||(28058009-28058137)
chr3 (178-305)||(28068434-28068562)
chr3 (178-284)||(19435605-19435710)
chr3 (200-248)||(17954288-17954336)
[»] chr2 (8 HSPs)
chr2 (178-305)||(10416514-10416641)
chr2 (178-305)||(4698470-4698597)
chr2 (91-190)||(9310540-9310639)
chr2 (177-286)||(808176-808285)
chr2 (178-284)||(2588428-2588533)
chr2 (178-246)||(44324742-44324810)
chr2 (31-95)||(9306051-9306115)
chr2 (200-248)||(45333308-45333356)
[»] chr6 (12 HSPs)
chr6 (35-190)||(27684718-27684874)
chr6 (177-305)||(33063683-33063811)
chr6 (190-304)||(30130911-30131025)
chr6 (178-305)||(27527818-27527946)
chr6 (178-305)||(33056204-33056334)
chr6 (187-292)||(15969961-15970066)
chr6 (178-283)||(28041304-28041408)
chr6 (178-246)||(22014634-22014702)
chr6 (181-298)||(6952786-6952903)
chr6 (175-249)||(25477662-25477735)
chr6 (73-124)||(16692837-16692888)
chr6 (200-248)||(14011684-14011732)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-195)||(76660-76848)
[»] chr7 (3 HSPs)
chr7 (176-305)||(28804127-28804256)
chr7 (168-305)||(26525365-26525503)
chr7 (200-248)||(36263730-36263778)
[»] chr4 (5 HSPs)
chr4 (176-295)||(5358101-5358221)
chr4 (181-298)||(30873893-30874010)
chr4 (178-284)||(27560628-27560733)
chr4 (178-272)||(51534234-51534327)
chr4 (178-272)||(18693730-18693823)
[»] chr8 (4 HSPs)
chr8 (177-305)||(28602613-28602741)
chr8 (178-305)||(15925508-15925635)
chr8 (178-286)||(4706151-4706259)
chr8 (200-248)||(18983071-18983119)
[»] scaffold0713 (1 HSPs)
scaffold0713 (200-305)||(1283-1388)
[»] scaffold0002 (4 HSPs)
scaffold0002 (177-270)||(10306-10399)
scaffold0002 (180-305)||(406455-406580)
scaffold0002 (255-304)||(412530-412579)
scaffold0002 (180-305)||(423827-423951)
[»] scaffold0014 (1 HSPs)
scaffold0014 (177-305)||(115262-115390)
[»] scaffold0012 (1 HSPs)
scaffold0012 (178-298)||(233054-233174)
[»] scaffold0654 (2 HSPs)
scaffold0654 (177-297)||(3957-4077)
scaffold0654 (177-297)||(5309-5431)
[»] scaffold0406 (1 HSPs)
scaffold0406 (177-278)||(4129-4228)
[»] scaffold0007 (1 HSPs)
scaffold0007 (200-246)||(61210-61256)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 16101615 - 16101316
Alignment:
Q  8 aatcaaagaccaacaaatataataagatcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaattt 107  Q
    ||||||||||||| | | |||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  16101615 aatcaaagaccaaaagaaataacaagattggacaacaaatgacactaccataggatgcaaatagatttttgcaagtaaatggtgccgcagttcacaattt 16101516  T
Q  108 actagcaagaatctattttcattctatgtctgcagctattaggacctacaacc-gagctctgataccaac-ttgtcacgacccaaaattcaatttcgtga 205  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  16101515 actaacaagaatctattttcattctatgtctgcagctagtaggacctacaaccagagctctgataccaactttgtcacgacccaaaattcaatatcgtga 16101416  T
Q  206 ccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcacttataatga 305  Q
    ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  16101415 ccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttgacaaactataatttaaacaattttcaagttgactttcacttaaaatga 16101316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 14655138 - 14654841
Alignment:
Q  10 tcaaagaccaacaaatataataagatcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttac 109  Q
    ||||||||||| | | |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  14655138 tcaaagaccaaaagagataataagattggacaacaaatgacactaccatagaatccaaatagatttttgcaagtaaatggtgccgcggttcacaatttac 14655039  T
Q  110 tagcaagaatctattttcattctatgtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgaccc-aaaattcaatttcgtgacc 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||   ||||||||    
T  14655038 tagcaagaatctattttcgttctatgtctgcagctattaggacctacaaccgagctctgataccaactttgtcacgacccaaaaattcacaatcgtgacc 14654939  T
Q  208 ggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcacttataatga 305  Q
    ||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  14654938 ggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaataattttcaaattgactttcacttaaaatga 14654841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 177 - 305
Target Start/End: Complemental strand, 16104900 - 16104772
Alignment:
Q  177 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16104900 ttgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttgacaaactataatttaaaca 16104801  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    ||||||||||||||||||||||| |||||    
T  16104800 attttcaaattgactttcacttaaaatga 16104772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 178 - 305
Target Start/End: Original strand, 19656889 - 19657016
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19656889 tgtcacgacccaagattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacaatccttgacaaactataatttaaacaa 19656988  T
Q  278 ttttcaaattgactttcacttataatga 305  Q
    |||||||||| |||||||||||||||||    
T  19656989 ttttcaaatttactttcacttataatga 19657016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 14650969 - 14650841
Alignment:
Q  178 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14650969 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14650870  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    ||||||||||||||||||||||| |||||    
T  14650869 attttcaaattgactttcacttaaaatga 14650841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 14660760 - 14660632
Alignment:
Q  178 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14660760 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14660661  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    ||||||||||||||||||||||| |||||    
T  14660660 attttcaaattgactttcacttaaaatga 14660632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 305
Target Start/End: Original strand, 17478215 - 17478342
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||     
T  17478215 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagccaattgacaacacttgacaaactataattcaaacat 17478314  T
Q  278 ttttcaaattgactttcacttataatga 305  Q
    ||| |||||||||||||||||| |||||    
T  17478315 tttccaaattgactttcacttaaaatga 17478342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 29287704 - 29287817
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  29287704 tgtcacgacccaaaattcacgatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgac-aactataatttaaacaa 29287802  T
Q  278 ttttcaaattgactt 292  Q
    ||||||| |||||||    
T  29287803 ttttcaatttgactt 29287817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 17652807 - 17652875
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 246  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  17652807 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 17652875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 47050059 - 47050130
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 249  Q
    |||||||||||||||||||    |||||| ||| ||| ||||||| |||||||||||| ||||| |||||||    
T  47050059 tgtcacgacccaaaattcacaaccgtgactggcgcacaaactagaacatcctagtccgacaagcatattgac 47050130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 5518806 - 5519102
Alignment:
Q  10 tcaaagaccaacaaatataataagatcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttac 109  Q
    ||||||||||| | | |||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  5518806 tcaaagaccaaaagaaataataagattggacaacaaataacactaccatagaatgcaaatagattcttgcaagtaaatggtgccgcggttcacaatttac 5518905  T
Q  110 tagcaagaatctattttcattctatgtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgacccaaaattcaatttcgtgaccg 208  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||   |||||||||    
T  5518906 tagcaagaatctattttaattctatgtctgcagttattaggacctacaaccgggctctgataccaactttgtcacgacccaaaattcacaatcgtgaccg 5519005  T
Q  209 gcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcacttataatga 305  Q
    || ||||||||||| |||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||| ||  |||||||| |||||    
T  5519006 gcgcacgaactagaacatcatagtccggcaagcctattgacgacacttaacaaactataatttaaacaatttttaaatcgaaattcacttaaaatga 5519102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 38978649 - 38978534
Alignment:
Q  27 taataagatcggacaacaaatgacactaccatagaatgcaaatagattttt-gaaagtaaatggtgccgcggttcacaatttactagcaagaatctattt 125  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  38978649 taataagattgaacaacaaatgacactaccatagaatgcaagtagattttttgcaagtaaatggtgccgcggctcacaatttactagcaagaatctattt 38978550  T
Q  126 tcattctatgtctgca 141  Q
    ||| ||| ||||||||    
T  38978549 tcactctgtgtctgca 38978534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 42786185 - 42786077
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    ||||||||||||||||| |   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  42786185 tgtcacgacccaaaatttataatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaacaa 42786086  T
Q  278 ttttcaaat 286  Q
    |||| ||||    
T  42786085 tttttaaat 42786077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 305
Target Start/End: Original strand, 27197779 - 27197908
Alignment:
Q  177 ttgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 275  Q
    |||||||||||||||| ||||   |||||| |||| ||||||||||| ||||||||| ||||||| ||| ||||||| |||||||||||||||| ||||     
T  27197779 ttgtcacgacccaaaaattcacaatcgtgatcggcgcacgaactagaacatcctagttcggcaagtctaatgacaacacttgacaaactataatataaat 27197878  T
Q  276 aattttcaaattgactttcacttataatga 305  Q
    |||||| ||||||||||||||||| |||||    
T  27197879 aatttttaaattgactttcacttaaaatga 27197908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 15599535 - 15599416
Alignment:
Q  180 tcacgacccaaaat-tcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaat 278  Q
    |||||||||||||  ||||  ||||||| | | ||||||||||| ||||||||| |||||||||||||||| || |||||||  | | |||||| || ||    
T  15599535 tcacgacccaaaaactcaaaatcgtgacggacgcacgaactagaacatcctagttcggcaagcctattgacgacacttgacacgcaaaaatttagactat 15599436  T
Q  279 tttcaaattgactttcactt 298  Q
    || ||| |||| ||||||||    
T  15599435 ttccaatttgaatttcactt 15599416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 294
Target Start/End: Original strand, 7688409 - 7688541
Alignment:
Q  163 gctctgataccaactt-gtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaa 261  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7688409 gctctgataccaactttgtcacgacctaaaattcaatttcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacccttgacaa 7688508  T
Q  262 actataatttaaacaattttcaaattgactttc 294  Q
    |||||||||||||||||||||||||||||||||    
T  7688509 actataatttaaacaattttcaaattgactttc 7688541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 178 - 305
Target Start/End: Original strand, 5705065 - 5705192
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    ||||||||||||||||||||| ||||||||||| | |||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5705065 tgtcacgacccaaaattcaatatcgtgaccggcgctcgaactaagacatcctagtccggcaagcctattgacgacccttgacaaactataatttaaacaa 5705164  T
Q  278 ttttcaaattgactttcacttataatga 305  Q
    |||||||| ||||||||||||| |||||    
T  5705165 ttttcaaactgactttcacttagaatga 5705192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 28104514 - 28104386
Alignment:
Q  178 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||| ||||  |||||||||||| || |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||||| | |    
T  28104514 tgtcacgacccaaaaattcacattcgtgaccggcgcatgaactagaacatcctagtccggcaagcctaatgacgacacttgacaaactataatttagata 28104415  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    | ||||||||||||||||||||| |||||    
T  28104414 aatttcaaattgactttcacttaaaatga 28104386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 305
Target Start/End: Original strand, 28058009 - 28058137
Alignment:
Q  178 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28058009 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28058108  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    | ||||||||| ||||||||||| |||||    
T  28058109 aatttcaaatttactttcacttaaaatga 28058137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 305
Target Start/End: Original strand, 28068434 - 28068562
Alignment:
Q  178 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28068434 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28068533  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    | ||||||||| ||||||||||| |||||    
T  28068534 aatttcaaatttactttcacttaaaatga 28068562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 19435710 - 19435605
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| ||| |||| |||| |||||||| || |||||| |||||||||||||||||    
T  19435710 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctaatccgacaagtctattgacgacacttgac-aactataatttaaacaa 19435612  T
Q  278 ttttcaa 284  Q
    |||||||    
T  19435611 ttttcaa 19435605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 17954288 - 17954336
Alignment:
Q  200 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 248  Q
    |||| |||||||||||||||||| ||| |||  ||||||||||||||||    
T  17954288 tcgtaaccggcacacgaactagaacattctaacccggcaagcctattga 17954336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 10416641 - 10416514
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||    
T  10416641 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacacttgacaaactacaatttaaacaa 10416542  T
Q  278 ttttcaaattgactttcacttataatga 305  Q
    |||||||||||||||||||||| |||||    
T  10416541 ttttcaaattgactttcacttaaaatga 10416514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 4698597 - 4698470
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  4698597 tgtcacgacccaaaattcaatttcgtgaccggcgcatgaactagaacatcctagtccggcaagtctattaacgacccttgacaaactataatttaaacaa 4698498  T
Q  278 ttttcaaattgactttcacttataatga 305  Q
    ||||||||||||||||||||| ||||||    
T  4698497 ttttcaaattgactttcacttgtaatga 4698470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 9310540 - 9310639
Alignment:
Q  91 gccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgaccca 189  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  9310540 gccgcggttcacaatttactagcaagaatctattttcattc-atgtctgcagctattaggacctacaaccgggctctgatatcaactttgtcacgaccca 9310638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 808176 - 808285
Alignment:
Q  177 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  808176 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaaca 808275  T
Q  277 attttcaaat 286  Q
    ||||| ||||    
T  808276 atttttaaat 808285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 2588533 - 2588428
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    |||||||||||||||||||   |||||| |||| ||||||||||| |||||||||||||||||||||||||| || |||| | ||||||| |||||||||    
T  2588533 tgtcacgacccaaaattcacaatcgtgaacggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttggc-aactatagtttaaacaa 2588435  T
Q  278 ttttcaa 284  Q
    |||||||    
T  2588434 ttttcaa 2588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 44324810 - 44324742
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 246  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  44324810 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 44324742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 9306051 - 9306115
Alignment:
Q  31 aagatcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgc 95  Q
    ||||| ||||||||| |||||| ||| |||||||| |||||||||||| ||||||||||||||||    
T  9306051 aagattggacaacaagtgacacaaccgtagaatgctaatagatttttgcaagtaaatggtgccgc 9306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 45333356 - 45333308
Alignment:
Q  200 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 248  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||||    
T  45333356 tcgtgaccggcgcacgaactagaacattctagcccggcaagcctattga 45333308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 35 - 190
Target Start/End: Complemental strand, 27684874 - 27684718
Alignment:
Q  35 tcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctat 134  Q
    ||||||||||||||| ||||||||||| | | ||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  27684874 tcggacaacaaatgagactaccatagagttctaatagctttttgcgagtaaatggtgccgcggttcacaatttactagcaaaaatctattatcactctat 27684775  T
Q  135 gtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgacccaa 190  Q
    ||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||    
T  27684774 gtctgcagctatttggacctaaaaccgggctctgataccaactttgtcacgacccaa 27684718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 305
Target Start/End: Complemental strand, 33063811 - 33063683
Alignment:
Q  177 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    |||||||||||||||||||||| || ||||||||  ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  33063811 ttgtcacgacccaaaattcaatatcatgaccggcgtacgaactagagcaccctagtccggcaagcctattgacgacacttgacaaactataatttaaaca 33063712  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    ||||||||||||||||||||||| |||||    
T  33063711 attttcaaattgactttcacttaaaatga 33063683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 30131025 - 30130911
Alignment:
Q  190 aaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattga 289  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30131025 aaattcaatttcgtgatcggcgcacgaactagagcttcctagtccggaaagcctattgacgacccttgacaaactataatttaaacaattttcaaattga 30130926  T
Q  290 ctttcacttataatg 304  Q
    |||||||||||||||    
T  30130925 ctttcacttataatg 30130911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 27527946 - 27527818
Alignment:
Q  178 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||| ||||   ||||||||| | ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  27527946 tgtcacgacccaaaaattcacaatcgtgaccgacgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 27527847  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    ||||||||||||||||||||||| |||||    
T  27527846 attttcaaattgactttcacttaaaatga 27527818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 33056334 - 33056204
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt---gacaacccttgacaaactataatttaaa 274  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||| | |||||||||| |||||||||   ||| || |||||||||||||||||||||    
T  33056334 tgtcaagacccaaaattcaatatcgtgaccggcgcacgaactagagtaccctagtccggtaagcctattgacgacgacacttgacaaactataatttaaa 33056235  T
Q  275 caattttcaaattgactttcacttataatga 305  Q
    ||||||| ||||||||||||||||| |||||    
T  33056234 caatttttaaattgactttcacttaaaatga 33056204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 15969961 - 15970066
Alignment:
Q  187 ccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaat 286  Q
    ||||||||||   ||||||||||| |||||| |||| |||| ||| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||    
T  15969961 ccaaaattcacaatcgtgaccggcgcacgaaatagaacatcgtagcccggcaagtctaatgacgacacttgacaaactataatttaaacaattttcaaat 15970060  T
Q  287 tgactt 292  Q
    ||||||    
T  15970061 tgactt 15970066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 28041408 - 28041304
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||| |||| ||||||| || |||| | |||||||||||||||||    
T  28041408 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggtaagcttattgacgacacttggc-aactataatttaaacaa 28041310  T
Q  278 ttttca 283  Q
    ||||||    
T  28041309 ttttca 28041304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 22014702 - 22014634
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 246  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  22014702 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 22014634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 6952903 - 6952786
Alignment:
Q  181 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 280  Q
    |||||||||||||| ||  || |||||||  ||| ||||||| || ||||||  | ||||| ||||||| || |||| ||||||||||||||||||||||    
T  6952903 cacgacccaaaatttaaaatcctgaccggtgcacaaactagaacaacctagtatgacaagcttattgacgacacttggcaaactataatttaaacaattt 6952804  T
Q  281 tcaaattgactttcactt 298  Q
    | ||||| ||||||||||    
T  6952803 ttaaattaactttcactt 6952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 25477662 - 25477735
Alignment:
Q  175 acttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 249  Q
    ||||||||||||||||| ||||   |||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  25477662 acttgtcacgacccaaa-ttcacaatcgtaaccggcgcacgaactagaacatcctagtccggcaagcctattgac 25477735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 16692837 - 16692888
Alignment:
Q  73 tttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctatt 124  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  16692837 tttttgaaagtaaacggtgccgtggttcacaatttactagcaaaaatctatt 16692888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 14011732 - 14011684
Alignment:
Q  200 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 248  Q
    |||||| |||| ||||||||||| ||| |||| ||||||||||||||||    
T  14011732 tcgtgatcggcgcacgaactagaacattctagcccggcaagcctattga 14011684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 76848 - 76660
Alignment:
Q  8 aatcaaagaccaacaaatataataagatcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaattt 107  Q
    ||||||||||||| | | || | ||||| | |||| || | ||||||||| | ||||| |||||||||| | |||||||||||| |||||||||||||||    
T  76848 aatcaaagaccaaaagaaatcacaagattgaacaataagtaacactaccacataatgctaatagattttcgcaagtaaatggtgtcgcggttcacaattt 76749  T
Q  108 actagcaagaatctattttcattctatgtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgacccaaaattc 195  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||| |||||||||  ||||||||    
T  76748 actagcaagaatctattttcattctatgtctgcacctattaggacctactaccatgctctgataccaactttgtcacgattcaaaattc 76660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 176 - 305
Target Start/End: Complemental strand, 28804256 - 28804127
Alignment:
Q  176 cttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 275  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||||||||    
T  28804256 cttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagtctattgatgacacttgacaaactataatttaaac 28804157  T
Q  276 aattttcaaattgactttcacttataatga 305  Q
    |||||| ||||||  ||||||||| |||||    
T  28804156 aatttttaaattgtttttcacttaaaatga 28804127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 305
Target Start/End: Complemental strand, 26525503 - 26525365
Alignment:
Q  168 gataccaactt-gtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactat 266  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||| | | |||| ||| |||| |||||||| || |||||||||||||    
T  26525503 gataccaactttgtcacgaccaaaaattcaatatcgtgaccggcgcacgaactagaactttctagcccgacaagtctattgacgacacttgacaaactat 26525404  T
Q  267 aatttaaacaattttcaaattgactttcacttataatga 305  Q
    ||||| || | ||||||| ||||||| |||||| |||||    
T  26525403 aatttgaaaatttttcaatttgacttccacttaaaatga 26525365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 36263730 - 36263778
Alignment:
Q  200 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 248  Q
    ||||||||||| ||||||||||| |||  ||| ||||||||||||||||    
T  36263730 tcgtgaccggcgcacgaactagaacattttagcccggcaagcctattga 36263778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 176 - 295
Target Start/End: Original strand, 5358101 - 5358221
Alignment:
Q  176 cttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 275  Q
    ||||||||||||||||||  ||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5358101 cttgtcacgacccaaaatctaaaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgacaaactataatttaaac 5358200  T
Q  276 aattttcaaa-ttgactttca 295  Q
    |||||||||| ||||||||||    
T  5358201 aattttcaaatttgactttca 5358221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 181 - 298
Target Start/End: Original strand, 30873893 - 30874010
Alignment:
Q  181 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 280  Q
    |||| ||||||||||||  ||||||||||| ||| ||||||| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  30873893 cacggcccaaaattcaaaatcgtgaccggcgcacaaactagaacatcttagtccggcaagcctattgacgacacttgacaaactataatttaaacaattt 30873992  T
Q  281 tcaaattgactttcactt 298  Q
    | |||||||| |||||||    
T  30873993 ttaaattgaccttcactt 30874010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 27560628 - 27560733
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    ||||| |||||||||||||   ||||||||||| ||||||||||| ||||||||| |||||||||||||||| || |||| | |||||||||||||||||    
T  27560628 tgtcaggacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagcctattgacgacacttggc-aactataatttaaacaa 27560726  T
Q  278 ttttcaa 284  Q
    |||||||    
T  27560727 ttttcaa 27560733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 51534327 - 51534234
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 272  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || |||||| ||||||||||||    
T  51534327 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgaccacacttgac-aactataattta 51534234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 18693730 - 18693823
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 272  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || | |||| ||||||||||||    
T  18693730 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgacgacacatgac-aactataattta 18693823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 177 - 305
Target Start/End: Original strand, 28602613 - 28602741
Alignment:
Q  177 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||||||||   ||||||||||| |||||| |||| ||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  28602613 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaattagaacatcctagtccggcaagcctattaacgacacttgacaaactataatttaaaca 28602712  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    |||||||||| ||  |||||||| |||||    
T  28602713 attttcaaatcgaaattcacttaaaatga 28602741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 15925635 - 15925508
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    ||||||||||||||||| ||| ||||||||||| ||| || ||||||||||||||||| ||||||||||||   | ||||| || |||||||||||||||    
T  15925635 tgtcacgacccaaaatttaatatcgtgaccggcgcacaaattagagcatcctagtccgtcaagcctattgatggcacttgataacctataatttaaacaa 15925536  T
Q  278 ttttcaaattgactttcacttataatga 305  Q
    |||||||||||  | ||||||| |||||    
T  15925535 ttttcaaattgtttctcacttaaaatga 15925508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 4706151 - 4706259
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    |||||||||||||||||||   ||||||||||| ||| ||||||| |||||||||||||||||||  ||||| || ||| ||||||||||||||||||||    
T  4706151 tgtcacgacccaaaattcacaatcgtgaccggcgcacaaactagaacatcctagtccggcaagcccgttgacgacacttaacaaactataatttaaacaa 4706250  T
Q  278 ttttcaaat 286  Q
    |||| ||||    
T  4706251 tttttaaat 4706259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 18983119 - 18983071
Alignment:
Q  200 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 248  Q
    ||||||||||| ||||||||||| ||| ||||  |||||||||||||||    
T  18983119 tcgtgaccggcgcacgaactagaacattctagctcggcaagcctattga 18983071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 1388 - 1283
Alignment:
Q  200 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcactta 299  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  1388 tcgtgaccggcgcacgaactagaacatcctagtccggaaagcctaatgacaacacttgacaaactataatttaaataattttcaaattgacttacactta 1289  T
Q  300 taatga 305  Q
     |||||    
T  1288 aaatga 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 10399 - 10306
Alignment:
Q  177 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatt 270  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  10399 ttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgatgacacttgacaaactataatt 10306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 406455 - 406580
Alignment:
Q  180 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 279  Q
    ||||||||||||||||||  |||||| |||| ||||||||||| |||||| ||| |  || ||||||||| |  ||||||||||||||||||||| ||||    
T  406455 tcacgacccaaaattcaaaatcgtgatcggcgcacgaactagaacatccttgtcagtaaaacctattgacgaaacttgacaaactataatttaaataatt 406554  T
Q  280 ttcaaattgactttcacttataatga 305  Q
    || ||||||||||||||||| |||||    
T  406555 tttaaattgactttcacttaaaatga 406580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 412530 - 412579
Alignment:
Q  255 ttgacaaactataatttaaacaattttcaaattgactttcacttataatg 304  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||| ||||    
T  412530 ttgagaaactataatttaaataatttttaaattgactttcacttaaaatg 412579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 423827 - 423951
Alignment:
Q  180 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 279  Q
    |||||||||||||||||   | |||| |||  ||| ||||| | ||| ||||||||  ||  |||||||| |  |||||||||||||| |||||||||||    
T  423827 tcacgacccaaaattcacaattgtgatcggtgcacaaactaaaacattctagtccgaaaaatctattgacgaaacttgacaaactata-tttaaacaatt 423925  T
Q  280 ttcaaattgactttcacttataatga 305  Q
    || ||||||| ||||||||| |||||    
T  423926 tttaaattgattttcacttaaaatga 423951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 305
Target Start/End: Original strand, 115262 - 115390
Alignment:
Q  177 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||||||||   || ||| |||| |||||||||||  |||||| || |||||| |||||||| || ||||||| |||||||||||||||    
T  115262 ttgtcacgacccaaaattcacaatcatgatcggcgcacgaactagaatatcctaatcaggcaagtctattgacgacacttgacacactataatttaaaca 115361  T
Q  277 attttcaaattgactttcacttataatga 305  Q
    ||||||||||||| ||||||||| |||||    
T  115362 attttcaaattgattttcacttaaaatga 115390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 233054 - 233174
Alignment:
Q  178 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 277  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| ||||||||| || |||| | || |    
T  233054 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagtctattgacaacacttgacaaattaaaattcagacta 233153  T
Q  278 ttttcaaattgactttcactt 298  Q
    ||| ||| |||||||||||||    
T  233154 tttccaatttgactttcactt 233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 3957 - 4077
Alignment:
Q  177 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| ||||| || || |||| || |||||||||||||||    
T  3957 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattaacgacacttggcacactataatttaaaca 4056  T
Q  277 attttcaaattgactttcact 297  Q
    ||||| ||||||| |||||||    
T  4057 atttttaaattgattttcact 4077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 5309 - 5431
Alignment:
Q  177 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaac--tataatttaaa 274  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| |||||||| || ||||||| ||  |||||||||||    
T  5309 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattgacgacacttgacacactatataatttaaa 5408  T
Q  275 caattttcaaattgactttcact 297  Q
    ||||||| ||||||| |||||||    
T  5409 caatttttaaattgattttcact 5431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 278
Target Start/End: Complemental strand, 4228 - 4129
Alignment:
Q  177 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 276  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | ||||||||||||||||    
T  4228 ttgtcacgacccaaa-ttcacaatcgtgaccggcgcacgaactagaacatcctagtccagcaagcctattgacgacacttggc-aactataatttaaaca 4131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 61256 - 61210
Alignment:
Q  200 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 246  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  61256 tcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 61210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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