View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_199 (Length: 303)
Name: NF11737A_low_199
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_199 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 28161794 - 28161516
Alignment:
| Q |
12 |
gagatggacatcaaagctgtatacatcggcaggttgagtttgtggccgttgaaaactgcggcactcgggtgctctatagaaaaaagaagtggcacttggt |
111 |
Q |
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| T |
28161794 |
gagaaggacaccaaagctgtatacatcggcaggttgagtttgtggccgttgaaaactgcggcactcgggtgctctatagaaaaaagaagtggcacttggt |
28161695 |
T |
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| Q |
112 |
tcctccattgtgtcgggattaaggaacacagtgagaccataatcagtgagacaggactcaaagtcggcaccaagtaacacattggaagatttcagatttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28161694 |
tcctccattgtgtcgggattaaggaacacagtgagaccataatcagtgagacaggactcaaagtcggcaccaagtaacacattggaagatttcagatttc |
28161595 |
T |
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| Q |
212 |
cgtgagccatgccggggttttggtggatatagagaaggcctgttgctagatcttctgcaattttaagacatgatgtcca |
290 |
Q |
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| T |
28161594 |
catgagccatgccggggttttggtggatatagagaaggcctgttgctagatcttctgcaattttaagacatgatgtcca |
28161516 |
T |
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