View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_200 (Length: 302)

Name: NF11737A_low_200
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_200
NF11737A_low_200
[»] chr5 (2 HSPs)
chr5 (6-290)||(23971202-23971486)
chr5 (144-290)||(3017472-3017618)
[»] chr6 (2 HSPs)
chr6 (20-290)||(18187961-18188231)
chr6 (228-277)||(31922573-31922622)
[»] chr4 (2 HSPs)
chr4 (153-290)||(40115014-40115151)
chr4 (174-290)||(9006840-9006956)
[»] chr8 (1 HSPs)
chr8 (205-277)||(25447908-25447980)
[»] chr7 (1 HSPs)
chr7 (205-277)||(2608186-2608258)
[»] chr1 (1 HSPs)
chr1 (189-275)||(656163-656249)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 23971486 - 23971202
Alignment:
Q  6 ggacatcctgcacccagaatcataaagcatcttgcatcaagttttcaaattccaataaagtgtcctacctccatcgaatgtagctcatgtcattgtgcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23971486 ggacatcctgcacccagaatcataaagcatcttgcatcaagttttcaaatttcaataaagtgtcctacctccatcgaatgtagctcatgtcattgtgcca 23971387  T
Q  106 aaagtcataaactcccattttcagatcacagtctcaaaagcacaagacctcttgagttgatttattcggatgtctggggccctgctcctattaggtcttt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23971386 aaagtcataaactcccattttcagatcacagtctcaaaagcacaagacctcttgagttgatttattcggatgtctggggccctactcctattaggtcttt 23971287  T
Q  206 agatggtttcgtttattatgtaatttttattgatcatttttccaaatacatttggctttatccaatgaaatttaagtctgatgtc 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23971286 agatggtttcgtttattatgtaatttttattgatcatttttccaaatacatttggctttatccaatgaaatttaagtctgatgtc 23971202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 290
Target Start/End: Original strand, 3017472 - 3017618
Alignment:
Q  144 agcacaagacctcttgagttgatttattcggatgtctggggccctgctcctattaggtctttagatggtttcgtttattatgtaatttttattgatcatt 243  Q
    ||||| || |||||||||   |||||||||||||| ||||| |||||||| |||||||| |||||||| | | | || ||| |||| ||| |||||||||    
T  3017472 agcactaggcctcttgagaatatttattcggatgtatggggacctgctcccattaggtcgttagatggctacttgtactatctaatctttgttgatcatt 3017571  T
Q  244 tttccaaatacatttggctttatccaatgaaatttaagtctgatgtc 290  Q
     ||| |||||||  ||| | ||||| ||||||   ||||||||||||    
T  3017572 attcaaaatacaaatggttatatcccatgaaaaacaagtctgatgtc 3017618  T

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Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 18188231 - 18187961
Alignment:
Q  20 cagaatcataaagcatcttgcatcaagttttcaaattccaataaagtgtcctacctccatcgaatgtagctcatgtcattgtgccaaaagtcataaactc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  18188231 cagaatcataaagcatcttgcatcaagttttcaaattccaataaagtgtcccacctccatcgaatgtagctcatgtcattttgccaaaagtcataaactc 18188132  T
Q  120 ccattttcagatcacagtctcaaaagcacaagacctcttgagttgatttattcggatgtctggggccctgctcctattaggtctttagatggtttcgttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18188131 ccattttcagatcacagtctcaaaagcacaagacctcttgagttgatttattcggatgtctagggccctgctcctattaggtctttagatggtttcgttt 18188032  T
Q  220 attatgtaatttttattgatcatttttccaaatacatttggctttatccaatgaaatttaagtctgatgtc 290  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18188031 attatgtaatttttattgatcatttctccaaatacatttggctttatccaatgaaatttaagtctgatgtc 18187961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 31922573 - 31922622
Alignment:
Q  228 atttttattgatcatttttccaaatacatttggctttatccaatgaaatt 277  Q
    |||||||||||||| || || |||||  ||||||||||||||||||||||    
T  31922573 atttttattgatcacttctctaaatatgtttggctttatccaatgaaatt 31922622  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 40115151 - 40115014
Alignment:
Q  153 cctcttgagttgatttattcggatgtctggggccctgctcctattaggtctttagatggtttcgtttattatgtaatttttattgatcatttttccaaat 252  Q
    ||||||||| | ||||| || ||||| ||||| || || ||| ||||||| |||||||||||| | || ||| |||| ||| |||||||||| || ||||    
T  40115151 cctcttgagattatttactctgatgtatggggaccagcccctgttaggtccttagatggtttcttatactatctaatatttgttgatcatttctcaaaat 40115052  T
Q  253 acatttggctttatccaatgaaatttaagtctgatgtc 290  Q
    | |||||||||| ||| ||||||  ||| |||||||||    
T  40115051 atatttggctttttcccatgaaaaataaatctgatgtc 40115014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 9006956 - 9006840
Alignment:
Q  174 gatgtctggggccctgctcctattaggtctttagatggtttcgtttattatgtaatttttattgatcatttttccaaatacatttggctttatccaatga 273  Q
    ||||| ||||||||||||||||||||||| |||||||| | | | |||||  |||| ||| | |||||||| |||||||| ||| || | ||||||||||    
T  9006956 gatgtatggggccctgctcctattaggtccttagatggctacttatattacttaatatttgtagatcatttctccaaatatattgggttatatccaatga 9006857  T
Q  274 aatttaagtctgatgtc 290  Q
    ||  ||| |||||||||    
T  9006856 aaaataaatctgatgtc 9006840  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 25447908 - 25447980
Alignment:
Q  205 tagatggtttcgtttattatgtaatttttattgatcatttttccaaatacatttggctttatccaatgaaatt 277  Q
    ||||||||||   ||||||||| |||||||||||||| || || |||||  ||||||||||||||||||||||    
T  25447908 tagatggttttcgttattatgttatttttattgatcacttctctaaatatgtttggctttatccaatgaaatt 25447980  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 2608258 - 2608186
Alignment:
Q  205 tagatggtttcgtttattatgtaatttttattgatcatttttccaaatacatttggctttatccaatgaaatt 277  Q
    ||||||||||   ||||||||| |||||||||||||| || || |||||  ||||||||||||||||||||||    
T  2608258 tagatggttttcgttattatgtgatttttattgatcacttctctaaatatgtttggctttatccaatgaaatt 2608186  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 656249 - 656163
Alignment:
Q  189 gctcctattaggtctttagatggtttcgtttattatgtaatttttattgatcatttttccaaatacatttggctttatccaatgaaa 275  Q
    |||||||||||||| |||||||||| | | || ||| |||||||| ||||||||||||  ||||| |||||| | |||||| |||||    
T  656249 gctcctattaggtcattagatggttacttatactatctaatttttgttgatcattttttgaaatatatttggttatatccattgaaa 656163  T

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